barSeed - Barley Seed Development Database

Probe CUST_14773_PI390587928

Source Contig U35_28879

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14773_PI390587928	Hv_44K_v2	AGTGGCTGGAGTTGCTTTCCAAAATCTGTCAGGAGCAGAAAACATTGGGTATATTATACC	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57607.2	2061	2e-24	1487 - 1546	100	60 / 60	minus	ABC13403
MLOC	MLOC_57607.5	1830	2e-24	880 - 939	100	60 / 60	minus	ABC13403
MLOC	MLOC_57607.3	2002	2e-24	1148 - 1207	100	60 / 60	minus	ABC13403
MLOC	MLOC_57607.1	2446	2e-24	1523 - 1582	100	60 / 60	minus	ABC13403
MLOC	MLOC_57607.4	2176	2e-24	1208 - 1267	100	60 / 60	minus	ABC13403
JLOC1	JLOC1_37360.2	2310	8e-25	833 - 892	100	60 / 60	plus
JLOC1	JLOC1_37360.1	2473	8e-25	910 - 969	100	60 / 60	plus
Harvest21	ABC27984	577	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_28879	577	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_28879 577 Hv_44K_v2
GCGACGCGTTCGCGGCGGTGGAGCTGGCACTGGACTCGGTGGTGAAGGTGTTCACGGTGT
CAAGTGGCCCTAACTACTTCCTGCCGTGGCAGAACAAGGCCCAGCGCGAGAGCATGGGCT
CCGGCTTTGTAATTTCTGGAAAAAGGATCATCACAAATGCTCATGTGGTAGCTGATCATA
CTTTTGTTCTTGTGAGGAAGCATGGATCGCCAACAAAGTTCAAGGCGGAAGTTCAGGCTA
TTGGCCATGAGTGTGATTTGGCTCTTCTTACAGTTGAGAGCGAGGAGTTTTGGGAGGGGA
TGAACAGCTTAGATCTTGGAGACATTCCATTTTTGCAGGAAGCTGTCGCTGTGGTTGGCT
ACCCTCAGGGTGGAGACAATATCTCTGTCACCAAGGGGGTTGTTTCTAGAGTGGAACCAA
CACAGTATGCCCATGGTGCGACTCAGCTCATGGCTATACAAATAGATGCAGCTATTAATC
CAGGCAACAGTGGAGGGCCTGCAATCATGGGTGATAAAGTGGCTGGAGTTGCTTTCCAAA
ATCTGTCAGGAGCAGAAAACATTGGGTATATTATACC

Homology of Contig U35_28879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34460.1	615	2e-123	protein\|OsDegp7 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi2g25260.1	586	3e-128
Arabidopsis v10	AT5G36950.1	586	2e-113	\| Symbols: DegP10 \| DegP protease 10 \| chr5:14594992-14598216 FORWARD LENGTH=586