barSeed - Barley Seed Development Database

Probe CUST_14772_PI390587928

Source Contig U35_28880

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14772_PI390587928	Hv_44K_v2	TTGACGTCATGAACTTTGTAGAAGCTGAGGTATTGAGGCTTGAACAACTGAAAGTCAGTA	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59075.1	2614	2e-24	1368 - 1427	100	60 / 60	minus	ABC19772
JLOC1	JLOC1_38416.1	2118	8e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC27985	628	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_28880	628	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_28880 628 Hv_44K_v2
CAGGCAATTCGGTACGAGGCATATTTGGAAGAGATGAAGAATAGAAAGGCCGAAAGATGG
AACCAGATTCTTGATGTTATAGGCAAGATAAAAAAGATATCATCTGAGATCAGACCTGCA
GATTTTGTCCCTTTTAAAGCACCTGTGGATCAATCTGATCTATCCTGCAGAAGGCTAGAA
GAGTTAAGAACGGAGCTGCGGTCCCTAGAGAAAGAGAAGAGCGAGCGGCTAAAGCAAGTA
ATGGATTACCTGAATACTTTGCATTCCTTGTGTAAAGTACTTGGTGTTAACTTCAAGCAA
ACAATATCTGTTGTACACCCCAGTCTTGATGAGGAAGGCGTACCAATGAACATTAGCAAC
ACCACAATTGAGAGGTTGGCGTTGGCAATACAGAGACTACGGGAAACAAAAATTGAAAGG
ATGCAGAAGCTTCAAGATCTCTCGTCTACAATGCTCGAACTATGGAATCTTATGGATACA
CCGATAGAAGAGCAACAGTCGTTCCAGAATATAACATGCAATATTGCTGCATCAGAACCT
GAAATAACAGAGGCCGATGCCCTTACCATTGACGTCATGAACTTTGTAGAAGCTGAGGTA
TTGAGGCTTGAACAACTGAAAGTCAGTA

Homology of Contig U35_28880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g47970.1	663	9e-90	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g17300.1	682	1e-99
Arabidopsis v10	AT5G51600.1	707	2e-54	\| Symbols: PLE, ATMAP65-3, MAP65-3 \| Microtubule associated protein (MAP65/ASE1) family protein \| chr5:20961061-20964080 REVERSE LENGTH=707