barSeed - Barley Seed Development Database

Probe CUST_14767_PI390587928

Source Contig U35_28885

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14767_PI390587928	Hv_44K_v2	CATTACTTTGCTCACGATAATTCTATCCAAAAGCCAGATGTGAAGGGGGTGAATGCTCTG	46	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363025	2901	7e-23	1103 - 1162	98	59 / 60	plus	ABC14601
MLOC	MLOC_25012.1	1865	7e-23	1275 - 1334	98	59 / 60	plus	None
Harvest21	ABC18452	1075	3e-25	47 - 106	100	60 / 60	plus
Harvest35	U35_28885	683	3e-25	47 - 106	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_28885 683 Hv_44K_v2
ATTACGGTCACGAGTGCTTTCAGGCACACAAATGCAAAGCAGTATGCATTACTTTGCTCA
CGATAATTCTATCCAAAAGCCAGATGTGAAGGGGGTGAATGCTCTGCCGAATCGACCACC
TGGTATTAGCCTGCCAATTCAACTGCAGACAAGTAACAAACAGCTGCAACCCACAGAAAT
CCAGCAAGCCTCACAGCAATTATATGGAACTACTAACACCCCTCAGTCGTACCCTCGGCC
AACCAGTGGTTCGATGCCTCTTAGACCACAGAGTCAAGCGCCTGAAACACGACCTCCCTT
TCATCCTCATGGAAGGATTCCTGCAAAAGTCGGAACTGTTCCTACTCATCCGTCAATGCA
ACAGAATCCATTGGCACGCCAAATGCAACAAAATAAGGATATAAAAAATAATGCTCATAA
CCCAAGTGCTAATACAAAACAAGGTTCTGAGCCCGCAGGCAAGGCCCGCCAGGTTGGCAC
AGGTCCTTCGGCGAAATTGCAAGGAAAGCAGGCGGCCCCTAAAACATCTACACCACCTGC
CGCAAGGACTACTAAGAAATCGGGTGGCCAGAAGAAATCATTGGAAACGGCTGGTTCAGC
ACCACCACCATCCAGCANAAGACAAAAGACAGCTGGAGCCTTCCAGGAACAAAGCATCGA
TCAACTTAATGATGTCACAGCTG

Homology of Contig U35_28885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43750.1	729	4e-79	protein\|transcription initiation factor, putative, expressed
Brachypodium v1_2	Bradi3g50457.1	795	6e-104
Arabidopsis v10	None