barSeed - Barley Seed Development Database

Probe CUST_14757_PI390587928

Source Contig U35_28895

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14757_PI390587928	Hv_44K_v2	TATTGGGGAAAGTACTGGACTATTGCTGTTTTCTCATCAATTTATTTCATCGGCCTGTCT	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249000.1	2110	2e-24	408 - 467	100	60 / 60	plus	ABC23705
MLOC	MLOC_62595.1	875	2e-24	197 - 256	100	60 / 60	minus	None
MLOC	MLOC_62595.4	880	2e-24	196 - 255	100	60 / 60	minus	None
MLOC	MLOC_62595.2	647	7e-23	196 - 256	98	60 / 61	minus	None
JLOC1	JLOC1_40975.4	830	8e-25	574 - 633	100	60 / 60	plus
JLOC1	JLOC1_40975.3	697	8e-25	441 - 500	100	60 / 60	plus
Harvest21	ABC28005	577	3e-25	339 - 398	100	60 / 60	plus
Harvest35	U35_28895	577	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_28895 577 Hv_44K_v2
GCGACGGACCCCCTCCTCTCCTGGACGCAGCACAAGAGACGAGGTTACTGGTCCAAGAGG
ATGGGGATCAGGATGCAAGTCTTTACACAGGTGATGGGTCCGTTGACATCAAAGGCCGTC
CCGCAACAAGGCGCGACACAGGCAATTGGCGAGCATGCGTCTTCATCCTAGGAAATGAGT
GTTGTGAGCGTCTGGCCTACTATGGAATTGCAAAAAACCTAGTCACTTATCTGAAAATAA
GGCTTCATCAAGGCAATCTTGAAGCTGCAAGAAATGTTACCACTTGGCAAGGGACATGCT
ATCTGTCTCCCCTCATTGGAGCCATCCTAGCAGATTCTTATTGGGGAAAGTACTGGACTA
TTGCTGTTTTCTCATCAATTTATTTCATCGGCCTGTCTGTTTTAACTCTTTCAGCATCGC
TTCCAGCACTTCAGCCACCTTCATGTTTAGGAACCGTTTGTCCAGAAGCAAGCTTACTTC
AAAATGGCACATTTTTCCTAGGTCTCTATATGATTGCCCTAGGGACCGGAGGTATTAAAC
CATGTGTGTCATCCTTTGGGGCTGATCAATTTGATGA

Homology of Contig U35_28895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13240.1	592	5e-105	protein\|peptide transporter, putative, expressed
Brachypodium v1_2	Bradi1g68860.2	589	6e-114
Arabidopsis v10	AT2G02040.1	585	2e-86	\| Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 \| peptide transporter 2 \| chr2:487542-489707 FORWARD LENGTH=585