barSeed - Barley Seed Development Database

Probe CUST_14756_PI390587928

Source Contig U35_28897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14756_PI390587928	Hv_44K_v2	AAGTTGGTGGATGAGACATTTCATAAGCTCAAAGGAACAGAGGGTGTCTCTGTTGCTTCG	469	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45739.10	1436	7e-23	461 - 520	98	59 / 60	plus	None
MLOC	MLOC_45739.4	1048	7e-23	455 - 514	98	59 / 60	plus	None
MLOC	MLOC_45739.3	788	7e-23	555 - 614	98	59 / 60	plus	None
MLOC	MLOC_45739.6	993	7e-23	447 - 506	98	59 / 60	plus	None
MLOC	MLOC_45739.2	1053	7e-23	556 - 615	98	59 / 60	plus	None
MLOC	MLOC_45739.11	579	7e-23	369 - 428	98	59 / 60	plus	None
MLOC	MLOC_45739.8	1088	7e-23	464 - 523	98	59 / 60	plus	None
MLOC	MLOC_45739.9	1057	7e-23	464 - 523	98	59 / 60	plus	None
MLOC	MLOC_45739.7	1288	7e-23	446 - 505	98	59 / 60	plus	None
MLOC	MLOC_45739.1	1399	7e-23	557 - 616	98	59 / 60	plus	None
MLOC	MLOC_45739.5	1328	7e-23	455 - 514	98	59 / 60	plus	None
JLOC1	JLOC1_29673.8	1329	4e-23	452 - 511	98	59 / 60	plus
JLOC1	JLOC1_29673.7	1319	4e-23	473 - 532	98	59 / 60	plus
JLOC1	JLOC1_29673.6	1303	4e-23	457 - 516	98	59 / 60	plus
JLOC1	JLOC1_29673.5	1353	4e-23	476 - 535	98	59 / 60	plus
JLOC1	JLOC1_29673.4	1056	4e-23	459 - 518	98	59 / 60	plus
JLOC1	JLOC1_29673.3	1075	4e-23	478 - 537	98	59 / 60	plus
JLOC1	JLOC1_29673.2	1088	4e-23	460 - 519	98	59 / 60	plus
JLOC1	JLOC1_29673.1	1107	4e-23	479 - 538	98	59 / 60	plus
Harvest21	ABC28007	591	3e-25	470 - 529	100	60 / 60	plus
Harvest35	U35_28897	591	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_28897 591 Hv_44K_v2
GGGCTGCAGGAATTCGACACGAGGCTCTCTCGTGCCCACTCTCTCTCTCTCTCTCCACCC
CCACCCGCCTGGATCCGCACCGAGGCGCGGGTGCTGCCTCCATAGGAAGGAATTCAGTTC
TCCCCCTCACAGGCGGCGTCCTCGACGGTCAGCGGCGGCGACCCGGCACGGGAGTCCTTT
CGCCGGCCGCTCTCGTCGAAGGGGGCCTGGTCGAGGAATGCACCGTACACCATCGTACAC
CGTCATACAAGTGCAGAACGAGCTGAAGCAGAACAGGGCTTCCGACGGCCATGTGATTGC
CGCTCCGGAGAAGGAGGCCCTTGCTGCCGGTTGCCGCAAGGAGCTCGCGGGCTTGTGGGC
GTACTTCAAGGAGGTTTCTGGCCACAAGATGCAGATCGATGGTGGTGGAAACCTGTCAAG
CAATGCCATGATTGGGTGCTTGCTGGAGGAGAGCAATCTTGGGCTATCCAAGTTGGTGGA
TGAGACATTTCATAAGCTCAAAGGAACAGAGGGTGTCTCTGTTGCTTCGGTCCGCAGCTC
AGTCCTGCTCATTGGACAGAGGATGATGTACGGACAATCTACCCCCGATGC

Homology of Contig U35_28897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None