barSeed - Barley Seed Development Database

Probe CUST_14752_PI390587928

Source Contig U35_16902

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14752_PI390587928	Hv_44K_v2	CGTAGTTTCTTGTGACACAGTTGCAGTTTCTGTGCAAGATACAATTGCTACATCCTTGAT	2790	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.741	1.664	1.148	0.806	0.335	0.357
Raw	3775.023	5776.480	3415.093	3748.350	550.652	639.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372747	2805	3e-22	2750 - 2805	100	56 / 56	plus	ABC07986
JLOC1	JLOC1_26136.1	1161	8e-25	945 - 1004	100	60 / 60	plus
Harvest21	ABC07986	2790	3e-25	2710 - 2769	100	60 / 60	plus	ABC07986
Harvest35	U35_16902	2954	3e-25	2791 - 2850	100	60 / 60	plus

Contig Sequence (2954 bp)

>U35_16902 2954 Hv_44K_v2
AGCAGCAACAAATCATGCCCACTGTTTTCTCGAAGGTAAAAGACAGTCATATAAACCCTT
CGTTCCATCGCCGCCGCCGCCTACCTCTCCCTGGTCGGAAGGACCTTCGGCCACCCCTTT
CTCCTACCGCGACCGTGAAACTTGCGAGGTCAGCGTCCGCTTCGGGGAAGCTCAACCCAC
TCCAGATTTGTGTCGTATTCCATGGGGAAGAGCAGCAAGAAGAACAAGGTCATCCTCGCG
CCGCCGCTGCCGCCGGATGTCGACGACGAGGACATCTTGGTCTCCGACGAGGATGTGGAT
TTCGTCGAGGAGAATAGAGAGCACGTCCACTTGATCACCGGGCTCAACAGGAAGGCTCTC
GACAAAGTCGTCACCAGGGTCCCCGACCACGACGAGGACAAGGTCGAGCTCCTCTACGAG
GAGCGCGAGCGCAAGAGGAGGGCCGCCCTAGCCTTGAAACCCAAGGAGGACGATGACCTC
GAGGTGGACCCCGTCGACGCGCTCCCTGTCAAGACTCTGCAGGGGGAGCTGCTCTACAGA
ACCGCCAAGAGAGCAAAATCTGAAGACAAAGCTAAGGGTGCTGAATCTAGATCTGAAGAC
AAAGAGGCTGATGCCAAGCAAAGTTCTCAAAAGGAATATAAAGGAAGATCTAACAAAAAG
GAAGATAGTAAATTGCAGAATGTGCAGCGTCCAATTGAAGTTCCAAAGGAAAAACTGCAT
TCAGTAGTGTTGGAAGAGGTGAAGGAAGAACTTTCAGCTGATGAATTGTTTGAGAAAAAG
AAGTCTCAGCTTGCTGAATTAGGGATGGCCATGCTTGAAGATCCTGAATCAAACATTAGA
TCTCTGAATGATTTGCTAATTATATGCAACGATACAGACCAAACGGTTGTTAAACTTGGT
ATTATGTCCTTGCTTGCTGTGTTCAGGGACATAATTCCTAGTTATCGGATTAGGCAGCTG
ACGGAAAAAGAGCTTGCCGTAGAAGTTTCGAAAGAAGTGAAGAAGACGAGATATTATGAG
TACACGCTTATTCGTTCCTACAAGGCATACCTGCAGAAATTGATATCATTGGAGAAGCAA
CCCTATTTTTATCTTGTGGCAGTTCGTTGCTTGTGTAGTTTATTAGATGCTGCCCCACAC
TTTAACCACCGCGAAAGCTTACTGGCCAGTGTGGTCAGAAATTTAAGCTCCTCGAATGAT
GTAGCAAGGAAACTATGTTCCGAGGCAATAAGATCTCTATTTAGAAATGAAGGAAAACAT
CGTGGTGAGGCAACTGTTGAAGCAGTAAGATTGATATCAGCTAGTGTGAAGCTCAATGAT
TGCCAGCTCCATCCTGATGTCGTTGAGGTCTGCTTGTCTTTGAAGTTTGATGAAGACCTT
GGAAAAGATGAGAGCAAGGAAGAAAAACTTAAACCAAAGAAAAATAAACGATATCAGAAT
CGGGATGTCACAAAACCGAGTGATAAGAAGAAAATAAAGAAGGAATTGCTTTCTAAGGCT
AGACAAGAGGTTCATGCAAATCTTAGAGCTGTTTCGTTTACTCTTGATCCAAAGGAGAAA
AAAATGATACAAAGGGAAACACTAGCAGCTCTTTTTGAGACCTATTTTCGAATTTTGAAG
CATAGCATGAACACTTCAAATTCAAGGTATAAGGGCACTAGCGTCTTCCCTGGTGGCTCA
CACCCTTTACTTGCTCCATGCTTGGAGGGCTTAGGAAAATTCTCACATTTAATTGATTTG
GATTTCATGAGTGAACTTATCGCTTGCCTTAAGAAGCTTTCTGGGTATTCAGACCATCAA
GGTGAAATTTCACCGGACACCACACTCTCTGTGTCAGAACGCCTACAATGCTGCATAGTT
GCTTTTAAAGTCTGGAGGAGCAATCTTGAGGCTTTGAATGTAGACCTGCAGGACTTCTTT
GTGCAGTTTTATAACCTTATACTGGAGTATCGACCTGACAGAGATCGTGGTGAGGTTTTG
GCCGACGCTCTGAAGACACTTCTGTGGGAAGGCAAGCAGCAGGATATGCTAAGAGCAGCT
GCTTTCATTAAACGTCTGGCAACATTTGCTCTGTCATTTGGCTCCGCAGAAGCAATAGCA
GCCTTGATCACGCTGAAGCATCTTCTCCAGAAGAATACCAAGTGCCGAAACATGTTGGAA
AATGATGCTGGCGGTGGTTCCCTGTCTAGCTTAGTTGCGAAATATGACCCAGAGGCTAAA
GATCCTTATCTTAGTGGAGCACTAGCAACAGTACTTTGGGAGCTTAGCCTTCTGCAGAAG
CATTATGACGAAACTGTTAGTGGAATGGCTTCAAATGTCTTGAGCATGGCAAATCTGAAC
GCCACCCAGAATCCAGTTCAACTTTCTAGCTCGAATCCTCTAGAAGCATACAAAGACTTG
TCGATGGGACGGGAATTATCAAAGCCAACCCACAAATTGTCACATACATTGAAGTGCAAA
AGGAAACGTCGCAGCAAGGAGTTTGTCGCTCTAAGCCCAGATGTGCTTGAGAAGGCAGAT
TGCACGGTGGGCGAAGATGAACTGAGAGAGAAGTTGCAAAGTCATTTTGCTGTACTAAGA
GGCATTTCTGAGAATGAGAGATTGAGGACCGAGTTGAACCATGCATTGTCATCCATAAGC
ATGTACAAGGAATACAAGAAGCAGAAAAAGGCAAGCAAGAAATCAAAAAACGTTGCAAGG
GCTTAGTTGTCTTGCGTTCTGTGGATTTTTACCACACGAGCGGTAGAAGGTGTCCCCCAA
TTCTGTTGTAGCACCACTGTATCGATTTATCGTAGTTTCTTGTGACACAGTTGCAGTTTC
TGTGCAAGATACAATTGCTACATCCTTGATGATTTTGCATAAAAAAAAAAAAAAAAACTT
TTCTTTGCGTTGCTCCAAGAAACGCAAAGTCAACGCAACGGTGATGTGCTCCCTGCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_16902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g30320.1	847	protein\|NOC3 - Putative nucleolar complex subunit 3, expressed
Brachypodium v1_2	Bradi1g59970.1	831
Arabidopsis v10	AT1G79150.1	830	binding \| chr1:29772716-29777874 REVERSE LENGTH=830