- Probe CUST_14744_PI390587928
- Source Contig U35_16910
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14744_PI390587928 | Hv_44K_v2 | AGCTATCTCTTCTCTGATTCGTAATAATCAGCCTGGGCTTGCCGCATTTCGTCTAGGAAA | 759 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.459 | 0.565 | 1.383 | 1.695 | 1.008 | 1.085 |
| Raw | 82.784 | 157.869 | 341.551 | 662.474 | 138.390 | 162.943 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361090 | 2910 | 2e-24 | 1481 - 1540 | 100 | 60 / 60 | plus | ABC06713 |
| MLOC | AK251725.1 | 1565 | 2e-24 | 742 - 801 | 100 | 60 / 60 | plus | ABC06713 |
| MLOC | MLOC_12937.1 | 863 | 2e-24 | 758 - 817 | 100 | 60 / 60 | minus | ABC06713 |
| MLOC | MLOC_12937.2 | 1127 | 2e-24 | 758 - 817 | 100 | 60 / 60 | minus | ABC06713 |
| MLOC | MLOC_12937.3 | 1736 | 2e-24 | 748 - 807 | 100 | 60 / 60 | minus | ABC06713 |
| MLOC | MLOC_12937.5 | 1150 | 2e-24 | 617 - 676 | 100 | 60 / 60 | minus | ABC06713 |
| MLOC | MLOC_12937.4 | 1673 | 2e-24 | 748 - 807 | 100 | 60 / 60 | minus | ABC06713 |
| JLOC1 | JLOC1_8716.2 | 1407 | 8e-25 | 389 - 448 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8716.1 | 1200 | 8e-25 | 182 - 241 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48031 | 635 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06713 | 1622 | 3e-25 | 693 - 752 | 100 | 60 / 60 | plus | ABC06713 |
| Harvest35 | U35_16911 | 1739 | 3e-25 | 693 - 752 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16910 | 862 | 3e-25 | 760 - 819 | 100 | 60 / 60 | plus |
Contig Sequence (862 bp)
>U35_16910 862 Hv_44K_v2 CCTCACCTCACCTCACCTCAGGAAGCGCACCGTAGGTTCCGGAACACTCCAGAGCCCCGC CGCCGCCGCCCCTCCATCTCCACCACGCCACGGCCGACCAAGGCGAGGAGGAGAGACCCA TCAAACCAACGAGAGCACTACAAAAAGAAAGGGGAGGAGCCAGAGTCCATACAACAACCA CTACTGCCTCCGGCGGCAGCCCACGGAATCGTCCTCGCAGCACCAGCGGCTCTCCGGCGA CAAGCGCGAGGAAATGGCCAAGGAAGGAGCTGGAGGCGGCCCCGACTGGAACGGCCTGCT CAAGTGGAGCCTCGCCCACGGCGCCGACGGCACCAACCCGCCCCGCGCGCTCAGCGAGGA GGACAGGAAATGGTTTATGGAGGCGATGCAGGCCAACACAATTGATGTCGTCGGCAGGAT GAAGGAGATCGCCCAGGTGATGAAAACCCCTGATGATGTGTTGCAGTCTCATGGCGTCAC TCCAGGGAACATTGAAGATATGCTTGATGAGTTACAAGAGCATGTGGAATCCATTGATAA TGCAAATGATCTTCATTCTATTGGTGGACTAGATCCTCTACTTGGTTACTTAAAAAATTC ACATGCTGGCATCCGAGCAAAGGCAGCAGAAGTTGTGAGTACGGTTGTCCAGAATAACCC GAAAAGCCAGCAACTTGTCATGGAATCTAATGGACTTGAGCCACTGCTGACAAACTTCAG GTCTGATCCTAGCACGACCGCACGCACAAAAGCTCTGGGAGCTATCTCTTCTCTGATTCG TAATAATCAGCCTGGGCTTGCCGCATTTCGTCTAGGAAATGGCCATGCTGCACTGAAAGA TGCACTTGGTTCTGATGATGCT
Homology of Contig U35_16910 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g60780.1 | 380 | 3e-119 | protein|armadillo/beta-catenin-like repeat containing protein, expressed |
| Brachypodium v1_2 | Bradi1g03590.1 | 374 | 2e-132 | |
| Arabidopsis v10 | AT3G09350.1 | 363 | 3e-94 | | Symbols: Fes1A | Fes1A | chr3:2871216-2873109 FORWARD LENGTH=363 |