barSeed - Barley Seed Development Database

Probe CUST_14741_PI390587928

Source Contig U35_16913

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14741_PI390587928	Hv_44K_v2	CCTTGTCCATTCAAGACTTTTGTTATGTCTGTGCTTCCCTGACATATATTTGCCAAAAAA	1833	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.846	1.690	1.053	0.856	0.344	0.279
Raw	1775.000	2518.484	1376.943	1751.319	248.596	218.954

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06657	1799	3e-25	1729 - 1788	100	60 / 60	plus	ABC06657
Harvest35	U35_16913	1904	3e-25	1834 - 1893	100	60 / 60	plus

Contig Sequence (1904 bp)

>U35_16913 1904 Hv_44K_v2
CTCCCCTTCTCCTGCTCTCCCTCCCAGCGGCGGGCGCCTCGTCGGTGGCGAGCCTCGTCG
GACGCGCTCCTCGGCGGCGTCGGGTACCTCCCTCCTCTCACTCCCGCACCCAAAACTTAG
GCACCAACGATACTCCGCACTCCCCCCTGCCGCCGGGATGACAGAGGACGTGCAGATGGG
CGAGCCTCAGTCGGCCCCTCCTCCCGCCGCCGCGGCGGCGCCGGCCCCCTCCACCCTCCA
ACATCTGAAGGAGATCGCCGCGGTGATCGAGGCGGGGTCGCTCTCGAAGGAGGTACGCCG
GATCTCCCGCGCCGTCCGCCTCACCGTCGCCCTACGCCGCCGCCTCGCCGCCCGCGACGT
CTCGGCCTTCCTCGCCTTCGCCCTCCCGGCCTCCAGCGACGCGTACGCCCGCCTCACCCC
CCTCCTCCCCAAGGAAGATGAAGCTGAGATGGATGTTGATGCAGCAGCTCCACCAACTCA
GATTTCTATCAAGCATGGCCTTCCTGAGATTGAAATATATTGTTCTTTGCTTGTCCTGAT
TTTCCTCATTGATCAGAAGAAATACGATGAGGCTAAATCATGCGCAACTGGAAGCATTGC
CCGTCTGAAGAACTTGAACAGGAGAACTGTTGATGTTTTGGCTTCTAGGCTGTACTTCTA
TTATTCGTATGTGTATGAACTTACCAACACCCTTGCTGAAATTCGTGGTAATCTCCTTGG
GTTACATAGAATGGCAACTTTACATCACGATGAGCTTGGTCAGGAAACCCTGCTCAATCT
GCTTCTCCGCAATTACCTCCACTATAACTTGTATGACCAGGCAGAGAAACTTAGGTCGAA
GGCACCACGTTTTGAAGCCCATTCCAACCAGCAATTCTGCCGGTACCTCTTCTACTTGGG
GAAAATCAGAACAATTCAGTTGGAGTACACTGATGCTAAAGAAAGCCTCCTGCAAGCTGC
TAGGAAGGCACCGGCTGCAGCTCGTGGCTTTAGGATTCAGTGCAATAAATGGGCTATCAT
AGTAAGGCTGCTTCTTGGGGAGATCCCAGAGAGGACTGTTTTCATGCAGAAAGGAATGAA
GGAAGCTCTGACACCATATTTTGAGCTTACAAATGCTGTCAGGATTGGCGATTTGGAACT
GTTTAGAGCTGTTGCAGACAAATTTGCAAGCACATTCAGTGCAGACAGGACTCACAATTT
GATTGTGAGGCTCCGCCACAATGTCATTCGAACTGGACTACGCAACATCAGCATTTCATA
CTCGCGGATCTCCCTTGCTGATATTGCGAAGAAGCTAAGGCTAGACACTGGGAATCCTGT
TGCCGATGCGGAGTGCATTGTAGCCAAGGCCATAAGAGATGGTGCTATTGATGCCACCAT
AGACCATGCAAATGGCTGGATGGTGTCGAAAGAAACTGGTGATGTCTACTCGACAAATGA
ACCCCAGGCTGCATTCAACTCCAGGATTGCGTTCTGCCTCAACATGCATAATGAAGCGGT
CAAGGCCATGAGGTTTCCCCCGAATTCTCACAAGGAGAAGGAGAGCGCTGAGAAGCGCCG
AGAAAGGCTCCAGCAGGAGGAAGAGCTGGCAAAGCACATGGCTGAGGAGGATGACGATGA
TTTTTAAGTTGGTCCGTTTTTTGAATTGTTGATTTTAGATCCCTGAAATCACTGAATTGT
CCCCTCAAGGGAGGTTTGAATCTTGTAAACTTTTTACATCTTCTGTAATTCTATGTTGAT
CAGCACTTCATTGGACCGTAAATGTGTTTTGAGTTTATCTTTTCTCTTCCTCGTCGAAAC
TGGGTTTGAGGATCGCTGTACCATTTGAACCCGCCTTGTCCATTCAAGACTTTTGTTATG
TCTGTGCTTCCCTGACATATATTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g43640.1	487	protein\|26S proteasome non-ATPase regulatory subunit 3, putative, expressed
Brachypodium v1_2	Bradi1g71600.2	492
Arabidopsis v10	AT1G20200.1	488	\| Symbols: EMB2719, HAP15 \| PAM domain (PCI/PINT associated module) protein \| chr1:7001409-7004154 REVERSE LENGTH=488