barSeed - Barley Seed Development Database

Probe CUST_14730_PI390587928

Source Contig U35_3221

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14730_PI390587928	Hv_44K_v2	CAGGGTACGATACCTATACATTTTTCCTATTAACTATTAGCTCGTCTTTTAAATTGGGTG	1071	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.061	0.222	0.691	1.588	1.114	1.525
Raw	2.927	30.144	82.151	309.249	68.603	104.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45055.2	1205	4e-23	1072 - 1131	98	59 / 60	plus
JLOC1	JLOC1_45055.1	1265	4e-23	1132 - 1191	98	59 / 60	plus
Harvest21	ABC09460	1178	3e-25	1045 - 1104	100	60 / 60	plus	ABC09460
Harvest35	U35_3221	1205	3e-25	1072 - 1131	100	60 / 60	plus

Contig Sequence (1205 bp)

>U35_3221 1205 Hv_44K_v2
GGGGATGCTTCAGAGCACTGCAGTGTCAGTGTGGTTGTAGGCAACTCTGACTGAAGCAAT
GAGTTACAAGCTGGAGAAGAAGAGCAGCAGCGAAGAAGCCGCGCAGCTGAAACCAGCGTC
CTCTTGGGAAGAAGAGCAGCAGGAAAAGATAAATGAGGTGCGCGGTCTCCTGGGCAGTCT
GACGGAGGAGATGCCGAGTTTTCTGACCGACGCCACCATCCGCCGTTTCCTCCGGGCGAG
GAACTGGAGCACGGAGCAAGCAACCAAGGGTCTCAAGGAGACTGTCAAGTGGAGGCGTGA
GTACAGGCCGGATGCAATTTCCTGGGAAGACGTTGCAGAAATGGAGAACGAGGCCCGGAG
GACACATGTGGCCGACTACCTTGACAAGAACGGAAGAAGTGTCCTCGTAGCAAACGTTCC
AATGAAATCTAAAGTTTCAGGCAAGGAGCAGATAAAGCACCTGGTGTATCTCCTAGAGTA
TTTCGCCACCAACTCAGCGGATGAACAAGACGGCTTCGTCGTTTGGCTGACCGACTTCCG
AGGCTGGTCGATATCGAGCACGCCGCTGTCGACGACCCGCGAATCCATGCACATCATTCA
AAACCATTACCCGGGGGTGATAGCCGTGGCGATCCCTTTCGATCCTCCCAGGATTTTTGA
GTCCTTTTGGAAGATAGCAAAGAACTTCGTGCAGCCATACATGAAAGAGAAAGTGAAGTT
TGTGTATCCTAACAAGCCGGAGAGCCTGCAGATTATGGCTGACATCTTTGACTTGGATAC
GCTCGAGTCTTCATTTGGAGGAAGAAGCACCAGCACGGCCTTCGACATCGACAAGTACGC
CGAGAGAATGAGAAGAGCCGATAAGATGAGAGGAGCATCATCAAAAGATATAAATGGCTA
CACCTGATCTCGATCGCTGACCAATCACTTTTTTTTTCTGGAAAGGGTGGAATGCCCCCG
ACCTCGGCATCAAAAGGATGCATGCAATCATCTTATTAAATAAGGTACAAATACAAAGTC
TTAGATCCAAAACAGACTCATAAAATGAGCGTCACATTCAGCGATAAAAAACAGGGTACG
ATACCTATACATTTTTCCTATTAACTATTAGCTCGTCTTTTAAATTGGGTGAAGATAGCC
CGTGCTACCGTCTTTCAACGGTTGCATCCAATAAACAAAAGCTCCTTGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_3221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g18470.1	284	4e-116	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi2g31770.1	326	2e-136
Arabidopsis v10	AT4G08690.2	301	7e-69	Sec14p-like phosphatidylinositol transfer family protein \| chr4:5551521-5552713 REVERSE LENGTH=301