barSeed - Barley Seed Development Database

Probe CUST_14718_PI390587928

Source Contig U35_3234

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14718_PI390587928	Hv_44K_v2	GTGGTAAGACCCTAATGTCTGTTAGCGTGGCCAAATTTCAGCAGAAAGGTGATGTTTTTT	1155	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.472	1.007	0.906	0.478	0.556
Raw	933.074	1638.900	982.336	1395.411	262.372	326.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70973.1	1882	7e-23	688 - 747	98	59 / 60	minus	ABC07316 ABC07317
JLOC1	JLOC1_47131.2	1488	4e-23	1104 - 1163	98	59 / 60	plus
JLOC1	JLOC1_47131.1	1942	4e-23	1135 - 1194	98	59 / 60	plus
Harvest21	ABC07316	1898	1e-23	1156 - 1215	98	59 / 60	plus	ABC07316
Harvest35	U35_3234	1902	3e-25	1156 - 1215	100	60 / 60	plus

Contig Sequence (1902 bp)

>U35_3234 1902 Hv_44K_v2
AACTCTCTTGATCGGACGGCAGCGGCTTCCCACGGAGGGCACGGGCTGGACCCAGGTCTA
GACCACTCTGGAAACCCCAGCCCCCAAAATTTCCTCCCCCTCTCCGGCGGTGGCTTCACG
AAAGCGATTTCATATCGCCTGCGGCGAGGATACCGGAATCTCCGGCCCCAGCCTCCGCTC
CCCGCGCGTGGAGGTCCATGGACGGCGGTGGCGAGGTGGGCTGGTACGTGCTCGGCCCGA
GCCAGGAGCACGTCGGCCCCTACGCGCTCTCAGAGCTGCGAGATCATTTTGCTAATGGGT
ACCTCAACGAGAGCACAATGCTCTGGGCAGAGGGGAGGAGTGAATGGACACCACTATCTT
CGATTCCAGAGCTGCATCCCGGGGTCACAAAGAAGGATCAACCTGAACAAGAAACTGAAG
ATGATTTCAAGAAATTCCAGAAGGAGGTTATAGAAGCCGAGTCGGAGGTGGAAGCGCTGA
AAGCAAAGGCTGCAGATGGTGACTTAAGCAAAGAGCATGTCATTGATGATCCCGATGAGC
GACCATCATCCCCACCAGATGGTGTGGAAGAATTTACTGATGATGACGGCACCATCTACA
AGTGGGATCGCACTCTGAGGGCAATGGTTCCTCAAAATGATGTAGCAGGTGAAATGGACG
GCAACGGAGAGAATGACATATCACGTAAAAAGGATGACTATGAACTTGAAGACATGACTT
TTGCACTTGAGGAAGAAGTATTTCAGCCACCAGATATTCCTGGTTCGTCTACATTGGATG
AAAACCATGCTTTAACTGAAAAAGAAAAGAAAGGCCCAGAGAAGATAGATAAAAGGCTAG
AAAAGAAGCGGAAGTCTGAGAAGCCAACTGAAAAGAAGGAAGCTCAGAAACCTCCAGAAA
GTTGGTTTGATCTCAAAGTCAACACACATGTCTATGTTACTGGTTTACCTGAAGATGTCA
CGGCTGAGGAGATTGTAGAGGTATTTTCCAAGTGTGGAATTATAAAGGAGGATCCAGAGA
CAAGGAAACCCCGAGTGAAGATCTATACTGACAAGGAGACAGGCAGGAAAAAGGGTGATG
CACTTGTGACCTATCTCAAGGAGCCTTCTGTACCTTTAGCAATTCAATTATTGGATGGAA
CATCATTCCGTCCTGGTGGTAAGACCCTAATGTCTGTTAGCGTGGCCAAATTTCAGCAGA
AAGGTGATGTTTTTTTGGCAAAGAAGGCAGATAAGCAAAAGAAAAAGAAAGGCAAGAAGG
TTGAAGATAAGATGCTGGGATGGGGTGGACATGATGATAAGAAGGTGATGATTCCTACTC
AGGTGATTTTGGCGAATATGTTCAGTCCTGCTGAATTGAGAAATGATGAAACCCTTCTTC
CTGAACTTGAGGTAGATGTTAGAGAGGAATGTGTGAAGTTTGGTCTGATCGACAATGTCA
AGGTTTGTGAAAATCATCCACAAGGAGTTGTATTGGTAAAATTCAAAGACCGCAAAGATG
GTCTCAAATGCGTAGAGAAGATGAACGGAAGATGGTTTGGTGGGAGGCAGATACACGCGA
GCGAGGATGACGGTTCGATCAAACACGCTCTCATCCGTGACTACGACGCTGAGGTGTCAA
GGCTGGAGCGCTTTGGAGAAGAGTTGGAAGAATCCACATAGCAAGTTTTTCGGTCGCCCG
GCAGTTTAGGGCTGTTTTGTAGCTGATAGCGCGAAATTATACAAGAACAAAACAGAAAAG
AGCAGCTGGGTCATCTGTTTGTCCGATTATTCATACTATATGACTGCTTCTGGGTTAGCT
TTAAGCAGCGGAGTTGTTACATCAGCTAAACTTTGTCCAAATGTACTCCCACATTACAGA
GATTGAGCATTTTTGCCATGCTAACATGTAGTACAATCTTGC

Homology of Contig U35_3234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41910.1	477	0.0	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g14550.1	490	0.0
Arabidopsis v10	AT5G16260.1	519	4e-153	\| Symbols: ELF9 \| RNA binding (RRM/RBD/RNP motifs) family protein \| chr5:5311363-5315496 FORWARD LENGTH=519