barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14704_PI390587928Hv_44K_v2AGGATATGTGAGGATTCCACACATGAACTTCAATCATTGATCAATGCTCGCCCCAAAAAA868GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0720.1430.6531.6901.6422.523
Raw 137.115440.8631722.5276847.9132345.5103973.810



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_44370.112926e-21917 - 9729855 / 56plus
Harvest35U35_32489393e-25869 - 92810060 / 60plus



Contig Sequence (939 bp)

>U35_3248 939 Hv_44K_v2
GATGCAAACCACCCCGCCTTTTCCCCGAAGGAGCTAGCTAGCAAGAGGACGGCATGTGCG
GACGAGCACACGTCAGGAGCGTGTGGAAAGGCATGGTGCACGGGTGGTGACCGTATGCGT
CGGTTTGGGATCCTGTGCCCACCAGTCGTCCCTCGCCTGAAGGCCATATATACACAGTCA
CACTCCCACGCCACCCTCATGTCCTCGCACTCCTTCCACAGTCCACACAGGTCCTACAAT
CACAGAGCAGGTGAAGGAACCAGCTGCAACCGTCGGGGGGGCAGAGGTCAATCAGCGAGC
GAGCCCTGTGCCGGAGGCAGCTAAGGGGGCCGGCATGGCGGACTGGGCGCCGGTGTTCAT
CGGGCTGGTGCTCTTCATCCTCCTCTCGCCGGGGCTGCTGCTCCAGATCCCCGGCAAGGG
CAGGATGGTGGAGTTCGGCAACTTCCAGACCAGCGGCATCTCCATACTCGTCCACGCCGT
CATCTACTTCGCCCTCATCGCCATCCTCATCCTCGCCGTCAACGTCCACGTCTACATCGG
CTGACAAGGAGACGCGCGCCGCCAGCTGCTTCCTGATCGATCGATCAACAGCTAGGTATC
GTGGAGCATCGAGAGAAATACACATGCTGTCGCGTTCATGTTCAGGCGTCCTGGTTTAGC
TTAAGCTCGTAGAAGGGCATAGAAGCGCAGTACTATGTATGATGTTCATTGGGCAATTTA
GTTGATGATTTCATATTTTATCAGGAACGTATAGCTTCAACTTTTATGTACACCGCGTCT
TATGATGGTCCACGGTGCCTGATCTAAGGCTGTGTGCATCAATAAGTGCAACCTGAACTA
TGTTTAGGAATCTCATCTTTAGAGAGAAAGGATATGTGAGGATTCCACACATGAACTTCA
ATCATTGATCAATGCTCGCCCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_3248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None