barSeed - Barley Seed Development Database

Probe CUST_14703_PI390587928

Source Contig U35_3249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14703_PI390587928	Hv_44K_v2	ACTAGAGAAAACGAAACCTGAGAGATTGTTGTATTCCAAGTTTCCAACCATGGTGGTGAC	894	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.576	5.897	1.387	0.847	0.287	0.312
Raw	417.263	894.275	164.246	162.009	18.468	22.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373105	1038	2e-24	910 - 969	100	60 / 60	plus	ABC00112 ABC09463 ABC39923
MLOC	MLOC_43787.1	669	2e-24	450 - 509	100	60 / 60	minus	ABC09463 ABC39923
JLOC1	JLOC1_28321.1	887	8e-25	667 - 726	100	60 / 60	minus
Harvest21	ABC09463	1041	3e-25	883 - 942	100	60 / 60	plus	ABC09463
Harvest21	ABC39923	413	4e-24	67 - 124	100	58 / 58	minus	ABC39923
Harvest35	U35_3249	1046	3e-25	895 - 954	100	60 / 60	plus

Contig Sequence (1046 bp)

>U35_3249 1046 Hv_44K_v2
CACTCAACCAGAGCAGAGCAGAGCATTCGCCATTGCAGCCAGCACTCGCGGCGGCATGGG
TTCGAGGTACGAGGTGGAGGTGACGGTGGGCTCGGCGCGGGACCTGAAGAACGTCAACTG
GCGCAACGGCGACCTCAAGCCCTACGCCGTCGTCTGGGTCGACGACGGCGCCAAGTGCTC
CACCCGCGTCGACCTGGACCACGGCGAGAACCCCGAGTGGGACCAGAAGCTCGTCGTCCC
GCTCCCGCCCTCCACCGCCCGCCTCGAGGACGCCGTCCTCCGCATCGACGTCGTCCACGC
CGACGCCGCCGACGGCACCAAGCCGCTCGTGGGCTCCGCGCGCCTCATGCTGCGCGACGT
CCTCGACGACGCCGGCCTCGGCGGCCGCGCGTCCCGCTCCCTCCGCCTCAACCGCCCCTC
GGGACGGCCTCAGGGCCGCCTCGACGTCCGCGTCGCCGTCCGCGAGGCCGCCCGCTACTA
CGACCCCTCCTACCCGCCGCCCTACGGCCAGTCCGCCCGCGACCCCTACGCCGCCCCGGC
GCCGTACGGTTCCGGCGGCGGGTACGGCCAGCAGCCGCCATACGCCGCGCCCCCGTCGGG
CTACCCGGCCCCCTGGGGCGCCGGCGTACGGCGGTGCGCCCCAGGGGCAGCCGGCGTACG
GCGCTGCTCCTGCTCCCGCGTACGGATCGGGGGGGTACGGGTCGGTGGATGACCCTGCCA
AGAAGAAGGGAATGGGGATGGGGACGGGGCTGGCGGTGGGCGCGGCAGCGGGTGTGCTGG
GCGGGCTGGCGCTGGCGGGAGGGGCGAGCTACCTGGAGGAGAAGATCGAGGACAACGTGG
CGGAGAAGGTGGAGGACGACCTGGCCGGCGGCGGGTACTACGACGACGACGACTACTAGA
GAAAACGAAACCTGAGAGATTGTTGTATTCCAAGTTTCCAACCATGGTGGTGACTAGCCA
TCATCTTCTTTGCTTCTATTCTGGCCGGATTGATTGAATAAACGGGACGCGAATGATATT
ATCAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44850.1	292	8e-83	protein\|C2 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g38860.1	303	7e-83
Arabidopsis v10	None