barSeed - Barley Seed Development Database

Probe CUST_14702_PI390587928

Source Contig U35_3250

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14702_PI390587928	Hv_44K_v2	TCTGTCATGTTTGGATAGTGTCATGTGGAATGTAGTCAACGTACAAAGAGGTTTGCTAAA	661	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362118	2224	2e-24	2136 - 2195	100	60 / 60	plus	ABC08742
JLOC1	JLOC1_13003.1	1804	8e-25	1622 - 1681	100	60 / 60	plus
Harvest35	U35_3250	738	3e-25	662 - 721	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_3250 738 Hv_44K_v2
GAATTTGATCAACCATATCCTCAGTGCATAGCATACTTGGATCTGAAGCGTGAGGAGTGT
AGCCGACTTTTCCCATCCGGGCGGATTTACTCGCAAGCATTCCATCTTGCTGGACAGGGA
TTCTTCCTCTCAGCACATTGCAACATGGATCAGCAAAGTGCTTTCCACTGCTTTGGTCTC
TTCTTAGGGATGCAAGAGAAAGGCTCAACAAGTGTTACCGTGGACTATGAGTTTGCTGCA
AGGACAAGGCCGTCGGGCGATTTTGTCAGCAAGTATAAGGGCTACTACACCTTCACTGGT
GGAAAGGCAGTTGGCTACCGGAATCTCTTTGCAATTCCCTGGCCGTCGTTTATGGCTGAT
GACAGCCTCTTCTTCATTGATGGAGTACTACATCTGAGAGCGGAACTGACCATAAAGCAA
TCATAGATAGTGGAAAATCTTGTGTGGTTCAAACATGTTTTTCTTGAGCGACAAAATAGA
CACTTTTGAAACGAGAAGCAAAATCCATGAACTGTGAGAACTCAAAAGCAACATCTTATG
AACTGTGAAGGTGTAGTTGTGCCACATGAGTTTTTCTTAATGTGTAGCGCTACATGAGTT
AAATTTGCAGTTTGTTGAAATTTCTACAGTATTTGTTTTGATAGTGATCCTTCCGGGGAC
ATCTGTCATGTTTGGATAGTGTCATGTGGAATGTAGTCAACGTACAAAGAGGTTTGCTAA
AAAAAAATTTAAGAAAAA

Homology of Contig U35_3250 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g31100.1	537	8e-93	protein\|E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Brachypodium v1_2	Bradi1g39260.1	563	2e-93
Arabidopsis v10	AT3G61600.1	561	5e-77	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-protein 1 \| chr3:22795704-22797953 FORWARD LENGTH=561