barSeed - Barley Seed Development Database

Probe CUST_14701_PI390587928

Source Contig U35_3251

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14701_PI390587928	Hv_44K_v2	TTGCTACAGATGTGTTGACCTCCAGAAAGTATACTGAACGTGCTTACAAATATCGTCCGC	1029	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370013	2277	2e-24	1641 - 1700	100	60 / 60	plus	ABC08742 ABC38593
MLOC	AK360873	1832	2e-24	1093 - 1152	100	60 / 60	plus	ABC08742 ABC38593
MLOC	AK364287	2421	2e-24	1370 - 1429	100	60 / 60	plus	ABC08742 ABC38593
MLOC	MLOC_49413.1	2144	2e-24	826 - 885	100	60 / 60	minus	ABC08742
MLOC	MLOC_49413.2	1620	2e-24	296 - 355	100	60 / 60	minus	ABC08742
MLOC	MLOC_49413.3	2208	2e-24	885 - 944	100	60 / 60	minus	ABC08742 ABC38593
JLOC1	JLOC1_31633.3	2182	8e-25	1227 - 1286	100	60 / 60	plus
JLOC1	JLOC1_31633.2	2032	8e-25	1205 - 1264	100	60 / 60	plus
JLOC1	JLOC1_31633.1	3237	8e-25	1205 - 1264	100	60 / 60	plus
Harvest21	ABC08742	2112	3e-25	1357 - 1416	100	60 / 60	plus	ABC08742
Harvest35	U35_3251	1707	3e-25	1030 - 1089	100	60 / 60	plus

Contig Sequence (1707 bp)

>U35_3251 1707 Hv_44K_v2
ATTAGAATAGTTTTCTGTCATTACGCTCTGAAACTAATGCGCTTCCTCCTTAAGCATGTT
CTTGTTCTAGAGTGCAGTACCTTCCTTTTTTGATGATTTCCTGCTATCATTTCATGCCTC
CAGAATATGGAAAGTATATGTTCGAACCATCAAATGTCAAAATTGAAGCAGAAGAGCATG
ATACCTATGAGGAAACTGGTGAGGAGCCTGTAGCTATGATAGAAGAATCTCCACCTGATA
TTGGACAAGATGGGGAGGATGGACAAAACAGTGACTCATCCTGGAATATGGAGTGTAATC
AGGTTTTGAGAGTGAAATCTATTTATATCAGCTCTGCAATTCTAGCTGCAAAAAGTCCCT
TTTTTTACAAGCTTTTCTCCAATGGCATGAAAGAATCCGATCAGAGGCATGCTACTCTTA
GAATAACTACTTCAGAGGAAAGTGCCCTTATGGAGCTTTTAAGCTTTATTTACAGTGGGA
AGCTGACAACAAATGAGCCAACCCTTCTGCTTGATATCTTGATGATTTCTGACAAATTTG
AAGTTGTTTCTTGCATGAGGCACTGCAGTCAATTGCTAAGAAGCTTACCTATGACCACAG
AATCTGCACTTCTCTATCTAGATCTACCTTCCAGCATTTCAATGGCTGCAGCAGTTCAGC
CACTGACTGATGCTGCCAAGGAATTCCTCGCCAATAAATACAAGGATTTGACCAAGTTTC
AGGATGAAGTGATGAACATTCCCCTTGCTGGGATTGAAGCCATTTTATGTAGTAATGACC
TTCAGGTGGCATCGGAGGATGCAGTCTATGACTTTGTGATCAAGTGGGCTCGTGCTCAAT
GCCCAAGAACGGAAGAAAAACGTGAAATCTTGGGTACTCGGTTGCTGCCACTCGTTCGGT
TTTCTCATATGACCTGCAGGAAGTTGCGGAAGGTCCTTGCATGCAGTGATCTGGATAATG
AGCAGGCAACTAAAAGTGTCACTGATGCACTCCTGTACAAAGCTGATGCACCACATCGAC
AGCGCGCCCTTGCTACAGATGTGTTGACCTCCAGAAAGTATACTGAACGTGCTTACAAAT
ATCGTCCGCTTAAGGTGGTGGAATTTGACCGACCTTATCCTCAGTGCATAGCATACTTGG
ATCTGAAGCGTGAGGAGTGTGGCCGACTATTCCCATCTGGGCGGATTTACTCGCAAGCAT
TCCATCTTGCTGGACAGGGATTCTTCCTCTCAGCACATTGCAACATGGACCAGCAAAGCG
CTTTCCACTGCTTTGGTCTCTTCTTAGGGATGCAAGAGAAAGGCTCAACAAGTGTTACCG
TGGACTACGAGTTTGCTGCAAGGACAAGGCCGTCGGGTGAGTTTGTCAGCAAGTACAAGG
GCTGCTACACCTTCACTGGTGGGAAGGCGGTTGGCTACCGCAATCTCTTTGCAATTCCCT
GGCCTTCGTTTATGGCTGATGATAGCCTCTTCTTCATCAATGGGGTACTGCATCTGAGAG
CTGAATTGACCATAAAGCAACTCTAGATGGTGCTTGGTGCACTACTAACCTCATCTGTGT
CCTTGCACACACCTCAGTTCGTGCAACGTTGCACTTCAGTATGGAAAATCTTGTGTCATT
CAAACATGTTTTTACGCGGCACCAAAATAGACACTTTTGAAACGAGAATCCAAATCCTTT
GTTTTACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g31100.1	537	protein\|E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Brachypodium v1_2	Bradi1g39260.1	563
Arabidopsis v10	AT3G61600.1	561	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-protein 1 \| chr3:22795704-22797953 FORWARD LENGTH=561