barSeed - Barley Seed Development Database

Probe CUST_14700_PI390587928

Source Contig U35_3252

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14700_PI390587928	Hv_44K_v2	TCAATACCCAAGAACAGAAGAAAAACGTGAAATCTTGGGTACTCGGTTGCTGCCACTCGT	1162	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370013	2277	2e-24	1447 - 1506	100	60 / 60	plus	ABC08742 ABC38593
MLOC	AK360873	1832	2e-24	899 - 958	100	60 / 60	plus	ABC08742 ABC38593
MLOC	AK364287	2421	2e-24	1176 - 1235	100	60 / 60	plus	ABC08742 ABC38593
MLOC	MLOC_49413.1	2144	2e-24	1020 - 1079	100	60 / 60	minus	ABC08742
MLOC	MLOC_49413.2	1620	2e-24	490 - 549	100	60 / 60	minus	ABC08742
MLOC	MLOC_49413.3	2208	2e-24	1079 - 1138	100	60 / 60	minus	ABC08742 ABC38593
JLOC1	JLOC1_31633.3	2182	8e-25	1033 - 1092	100	60 / 60	plus
JLOC1	JLOC1_31633.2	2032	8e-25	1011 - 1070	100	60 / 60	plus
JLOC1	JLOC1_31633.1	3237	8e-25	1011 - 1070	100	60 / 60	plus
Harvest21	ABC08742	2112	3e-25	1163 - 1222	100	60 / 60	plus	ABC08742
Harvest35	U35_3252	1222	3e-25	1163 - 1222	100	60 / 60	plus
Harvest35	U35_3251	1707	6e-22	836 - 895	97	58 / 60	plus

Contig Sequence (1222 bp)

>U35_3252 1222 Hv_44K_v2
TCCCCAATCACACAACACAACCACGCCTCTCTTCCCCGTCTCACTCTTGCCCCCACGCCC
CCGCTTCCGCGGCCTTCTCGAACCTTCTTTCCGGCTAGGGTTCCGGCTCCGACGGCGGCG
AGGATGCCCTCTGCCGGGGCCGCGCGGCGGCGGAGGTGAGGCGGCGCGCGTGGTGTGACC
GGGACTGGGATTGGGATTGCGATTGGTATTGGAGGAGGAAGGGTGCCGTGGTGGTCGGGA
TGGACCCGGACTTCTCGCGGGCGAGCGGTGGCCCGAGCTTCGAGTTCGCCTTCAACTCGG
TCAACTTCTCCGACCGGGTCCTGCGGATCGAGATCGTCGCCGGGGACGACGCGCCGGGGG
CCAAGGGCGCCGCCGGCGAGGGGTGCTCGTCCATCGCCGACTGGGCGCGCCACCGCAAGC
GCCGCAGGGAGGATCTCCGCCGCGAGAAAGAATGTGGAAAGTATATATCGGAACCCGCAA
ACATCAAAATTGAAGCAGATGAACGTGATACCTATGAGGAAACCAATGAGGAGCCTGTAG
CTATGATAGAAGAATCTCCACCTGATATCGGACAAGATGGTGACGATGGAGAAAGTAGTG
ATTCATCCTGGAATATGGAGTGTAATCAGGTTTTGAGAGTGAAGTCCATATATATCAGCT
CTGCGATTCTAGCTGCTAAAAGTCCCTTCTTTTACAAGCTTTTCTCAAATGGCATGAAAG
AATCTGACCAGAGGCATGCAACTCTAAGAATAACTGCTTCAGAGGAAAGTGCCCTTATGG
AGCTTTTAAGTTTTATTTACAGTGGAAAGTTGACGACAAATCAGCCAACCCTTCTGCTTG
ACATCTTGATGATGTCTGACAAATTTGAAGTTGTTTCTTGCATGCGACACTGTAGTCAAT
TGCTAAGAAGCTTACCTATGACCACAGAATCTGCACTTCTCTATCTAGATTTGCCTTCCA
GCATTTCAATGGCTGCAGCAGTTCAGCCACTGACTGATGCTGCCAAGGAATTCCTGGCCA
ACAAATACAAGGATTTGACTAAGTTTCAGGATGAAGTGATGAACATCCCCCTTGCTGGGA
TTGAAGCCATCTTATGTAGTAATGACCTTCAGGTAGCATCGGAGGATGCAGTCTATGACT
TCGTCATCAAGTGGGCTCGTGCTCAATACCCAAGAACAGAAGAAAAACGTGAAATCTTGG
GTACTCGGTTGCTGCCACTCGT

Homology of Contig U35_3252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g31100.1	537	4e-167	protein\|E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Brachypodium v1_2	Bradi1g39260.1	563	3e-175
Arabidopsis v10	AT3G61600.1	561	5e-105	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-protein 1 \| chr3:22795704-22797953 FORWARD LENGTH=561