barSeed - Barley Seed Development Database

Probe CUST_146_PI415269222

Source Contig TA40740_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_146_PI415269222	Hv_44K_v2	GTGTGCCAGGTATGATGTATGTGATATGAAGTTCTTGTGACACTGCAATTTAGAATATTT	1883	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36871.1	3191	2e-24	3045 - 3104	100	60 / 60	plus	ABC09432
MLOC	MLOC_36871.4	1457	2e-24	1296 - 1355	100	60 / 60	plus	ABC09432
JLOC1	JLOC1_23795.1	2874	8e-25	2683 - 2742	100	60 / 60	plus
Harvest21	ABC09432	2158	3e-25	2026 - 2085	100	60 / 60	plus	ABC09432
Harvest35	U35_4202	2158	3e-25	2026 - 2085	100	60 / 60	plus

Contig Sequence (1996 bp)

>TA40740_4513 1996 Hv_44K_v2
CGGCACGAGGGTGGAGTGGATGCTGGGTTTGATGAGCATGATATTCCATATGACGTGCTC
TGGCTTGACATTGAGCACACTGATGGCAAGCGATATTTCACATGGGATCGTTCCACATTC
CCGAACCCAGAGGAGATGCAGCGGAAAATAGCAGATAAGGGGAGGAAGATGGTAACGATC
GTAGACCCACATATGAAGAGGGACAGTGGATACTACCTCCACGAGGAAGCTACCGCCAAA
GGTTACTATGTGAAAGATGCAAGCGGGAAGGACTACGATGGATGGTGCTGGCCTGGGTCA
TCATCATATCCCGACATGTTGAACCCTGAGATACGGGACTGGTGGGCTGACAAGTTCTCC
TATCAAAACTACAAGGGATCAACTCCAACACTGTACATTTGGAATGACATGAATGAACCA
TCAGTCTTCAACGGCCCTGAGGTCACCATGCCTAGGGATGCTATACACAACGGTGATGTT
GAACACCGAGAACTGCACAATGCATATGGGTACTATTTCCATATGGCTACATCAGATGGG
CTTCTCAAGCGAGGTGAGGGTAAAGACAGGCCCTTTGTTTTGTCAAGGGCTTTTTTTGCT
GGAAGTCAACGGTATGGGGCAGTTTGGACTGGTGACAACACTGCAGATTGGGATCACCTT
AAATCTTCTATCCCGATGGTTTTAACTCTTGGTCTTACTGGCATGACCTTCTCTGGTGCG
GATATTGGTGGATTCTTTGGTAACCCTGAACCTGACCTATTGGTGCGTTGGTACCAAGTA
GGAGCTTTTTATCCTTTCTTTAGAGGTCATGCTCACCATGACACCAAGAGGCGGGAGCCA
TGGTTATTTGGAGAGCGAAGAACTGCCCTCATGAGGGAGGCAATACATATGCGGTATTCA
TTGTTGCCCTATTATTACACTCTGTTCCAAGAGGCTAGTGTAACTGGTGTTCCTGTTATG
CGTCCTCTGTGGTTGGAATTTCCTGACGACAAGGAAACATACAATAATGGTGAGGCTTTT
ATGGTTGGGGCAAGCATTTTGGCCCAAGGAATTTATGAAGAGGACCAGAAATCAGTGTCC
GTTTACCTTCCTGGAACAGAGTTATGGTATGACTTGAGAAATGGATCCCCATACAAGGGC
AGTGTGTCACACAAGCTGCAAGTTTCAGAAGATAGCATACCAAGCTTCCAAAGGTCAGGT
ACAATTGTGCCAAGAAAGGATAGATTCAGGCGCAGTTCTACTCAGATGGTGAACGATCCA
TACACCCTGGTGATAGCCCTCAATAGCTCGGGTTATGCAGAAGGTGAACTTTATGTGGAT
GATGGGAAAAGTTATGATTACCAGCAAGGGGCATTCATCCATCGGCGTTTTGTATTTGCA
GACAATAAGCTAACTTCGATCAATATTGCGCCTGATAGTCTGACCAAGAAGGTTTATTCA
ACTGAGTGTGTGATTGAAAGAATTATAGTGCTTGGGTTACCATCGGGAGCAAAGAAGGCC
ATCATTGAACCTGGGAACCAAGAAGTGGAAATTGATCTAGGACCGATTAGTTTAAGGAGT
GGTTCAAAGTCTGTTGCACCAACAGTCAGGAGGCCCAATGTTCGAGTCGTAGATGATTGG
ACGATAAGGATCGCATGATATGCAGCCCATTCACACCTGGAGCCTGATGTCTCTATTGTT
CGCGTCAGGCCATAAACTTGGGTAATGCTAGAAGTGTAGTTTCAGCCTCGTAAATGTTCT
CTGTGGGCACCCAAATTTCGTTGTTTCGGTGGCCTCAAAATTTCTGCATGTATCTGGTAC
GCATGCTGCTTGTACTTCCAATTTTGACATAAGTGAGAGACATTAATTGCTGATGTATAC
CTGTAGCTTTTATACTGAAATTTGTGTGCCAGGTATGATGTATGTGATATGAAGTTCTTG
TGACACTGCAATTTAGAATATTTTTTTTGTAATCTGGATAGTTCTTGCTTAAGATTGTAG
ATGAATCTCACCAGTG

Homology of Contig TA40740_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11720.1	920	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi1g69780.1	915
Arabidopsis v10	AT5G63840.1	921	\| Symbols: RSW3, PSL5 \| Glycosyl hydrolases family 31 protein \| chr5:25545056-25548922 FORWARD LENGTH=921