barSeed - Barley Seed Development Database

Probe CUST_14699_PI390587928

Source Contig U35_3253

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14699_PI390587928	Hv_44K_v2	ATGATCAGGCGGCCTGTGCTCTGACAAAAAGCATTTGAACAAGCATTTTAACTTGCATTT	1613	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.699	1.858	1.033	0.846	0.336	0.397
Raw	307.213	546.603	256.012	334.931	46.022	58.966

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_19645.1	2873	8e-25	2432 - 2491	100	60 / 60	plus
Harvest21	ABC07492	665	3e-25	579 - 638	100	60 / 60	plus	ABC07492
Harvest35	U35_3253	1700	3e-25	1614 - 1673	100	60 / 60	plus

Contig Sequence (1700 bp)

>U35_3253 1700 Hv_44K_v2
TGGATCCAATGTCCGAAGCTACCTCTATTGTGAGGATGTTGCTGAGGCTTTTGAAGTCAT
TCTTCATCGTGGAGAAGTTGGACATGTTTACAACATTGGAACAAAGAGAGAGAGGACAGT
CACTGATGTTGCAAAGGATGTCTGCAGGCTTTTCAATCTTGAAGCTGATAAAGTAATCCA
GTTTGTCGATAATAGACCTTTCAATGATCAGAGGTATTTCTTGGATGATGAGAAGCTCAA
GAGTCTTGGGTGGTCTGAGCGCACTAGATGGGAGGAGGGCCTGAGGAAGACCATGGAATG
GTATGTAGCCAATTCTGACTATTGGGGTGATGTTTCTGGTGCACTGTTGCCTCATCCGAG
GACACTGATGATGCCTGGGTGTGAGGGCTCTGAGGAAATTAAAGGAATGCTAAATCTGTT
TACTAACAATCAAACGAAGATGGTGGCTCCAACATCAGAAGGTTCTTCCCAAACTCGTTC
GCTCAAGTTCTTGATATATGGCCGGACAGGATGGATTGGTGGACTTCTTGGCAAAATATG
CGAGAAACAAGGAATTCCATATGAATATGGAAAAGGTCGCTTGGAAGAGCGCTTTTCCAT
TGTCCTTGATATCCAAACTGTTAAGCCAACACATGTCTTCAATGCTGCTGGTGTTACTGG
CAGACCCAATGTTGATTGGTGTGAGTCTCACAAGCCAGACACCATACGTACCAATGTTGT
GGGCACCTTGACTCTAGCTGATGTTTGTCGGGAGCATGGGTTATTGGTGATAAACTATGC
CACTGGGTGCATATTCGAATATGATGCAAATCATCCTGAAGGATCGGGCATCGGCTTCAA
AGAAGAGAATAAACCAAACTTCACTGGTTCATTCTACTCAAAGACCAAGGCAATGGTCGA
GGAACTGTTGAAGGAGTACGAGAATGTCTGCACTCTGCGAGTCCGGATGCCGATATCGTC
TGACCTCAACAATCCCCGAAACTTCATCACAAAGATTAGCCGTTACGACAAGGTGGTAAA
CATCCCAAACAGCATGACTGTGTTGGATGAGCTTTTGCCGATTTCAGTTGAGATGGCAAA
AAGGAACTTGCGGGGCATCTGGAACTTCACCAATCCTGGTGTGGTCAGCCACAATGAGAT
TCTGGAGATGTACAAGAAGTACATGGATCCCAGCTACAAGTGGACAAACTTCACGCTGGA
AGAACAGGCCAAGGTCATAGTTGCACCTCGGAGCAACAACGAGATGGACGCGGCAAAGCT
GAAGAGAGAGTTCCCCGAGCTGCTATCGATCAAAGACTCATTGATCAAGTATGTCTTTGA
GCCCAACAGGAAGGTCCCAGCAACTTGAAAGCCAGAACAGGTAATAATATAGGAAACATA
TACCAAGCACCAAAAGATTTTAGGAATCATTCGTCGCGGCGATTCATTAGAATGTTTTTA
CGATACTTGGCAGCATATCTCTGTTACAGATTCACAGCATCATTTGAACTATATATTTGG
CAGTCTGCTGGTCGCAGCAAAGATATCTTGTACCATGATTCTGTCAAGAAACGAACTAAT
GCCGAGCACCTTTAAATCCTCTTAAAAAAAAAAAAAAAACCTTTTGTGTGTGAATGATCA
GGCGGCCTGTGCTCTGACAAAAAGCATTTGAACAAGCATTTTAACTTGCATTTNTTTCTC
TGTGCTCATCGTACTGATGC

Homology of Contig U35_3253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g17000.3	676	protein\|NAD dependent epimerase/dehydratase family domain containing protein, expressed
Brachypodium v1_2	Bradi3g08850.4	668
Arabidopsis v10	AT1G78570.1	669	\| Symbols: RHM1, ROL1, ATRHM1 \| rhamnose biosynthesis 1 \| chr1:29550110-29552207 FORWARD LENGTH=669