barSeed - Barley Seed Development Database

Probe CUST_14696_PI390587928

Source Contig U35_3256

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14696_PI390587928	Hv_44K_v2	TGATTTTTGACCCACCTTGCCGTTTCACCTATACGAGTGAGTTCGTATTTCAGCAAAAAA	1383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353632	1434	3e-22	1377 - 1432	100	56 / 56	plus	ABC09638
MLOC	MLOC_53495.1	857	3e-22	203 - 258	100	56 / 56	minus	ABC09638
JLOC1	JLOC1_34376.1	2445	1e-22	2291 - 2346	100	56 / 56	plus
Harvest35	U35_3256	1455	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1455 bp)

>U35_3256 1455 Hv_44K_v2
GCGAAACCGAAGCCCCCTCCAAATCCATTTCTTTCATTTCGGTTTCGAATCCCCTGGAGA
CGAGCTCGCGTCGCCTTCCTCCTCCTCCTCCGCCCGCCGCGTCGCCATCCGCCCCCCTTC
GAATCTGCGGGCGTCGCCGCCTGGCCTCGTTGTCGCCACGGGAGGGCGCGCGGGATGGGG
CGGTTGTTTGCGGTGGACGCCGCGGCGGCCTCGTCGGCCGTGGCCGCGGCGGCGATGACC
GGCGCGGTGGACTGGTGGAAAGACGTGAACGACTCGCCGATGTGGCAGGACCGCATCTTC
CACGCCCTCGCCGTGCTCTACGGCATCGTCTCCGTCGTCGCGCTTGTCCAATTGATCAGA
ATCGAGTGTAGGGTGCCCGAGTACGGGTGGACGACGCAGAAGGTGTTCCATTTCCTTAAC
TTCGTTGTGAATGGCGTGCGGTCCATCGTGTTTGTGCTGCGGCGAAACGTGCAGCTGATA
CAACCAGAGATACTTCAACATGTGATTCTTGATATGCCTGGGCTTGCGTTCTTCACTACA
TACGCGCTTTTGGTGCTATTCTGGGCCGAGATTTACTATCAGGCCCGTGCGATGTCGACT
GATGGACTTAGGCCAACTTTCTATTGGATCAATGGGGTGGTGTACGCAATTCAGATAATT
CTGTGGTTGGTTTTGTGGTGGAAACCAGTCCGAGTTATGGTCATATTGTCAAAGATGTTC
TTTGCAGGCGTATCACTGTTTGCAGCTTTTGGATTCCTTCTGTATGGTGGAAGGCTATTC
CTCATGTTGCAACGTTTCCCCGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGGTT
GGCTATGTCACTACCATCTGCTTTACTTGTTTCTTGATCAGATGTGTCATGATGTGTCTC
AATGCATTTGATAAAGCAGCTGATCTTGATGTTCTGAGCCATCCGATTCTGAATTTCTTC
TATTATCTGCTGGTCGAGATCATACCTTCAGCTATGGTTCTGTTTATCTTAAGGAAACTG
CCCCCAAAGCGTGGGATCACGCAGTACCATCCTATCCATTAGCGCAGAGCAGCCCTGGCT
GTGGTACAGACGACTGTTCCTTACAGAGTTGGTAAATACAGGAAAGGCAATGTGAAGATC
ACCGCACTTGCACTGAAGCTTGCCCAGGTTTTAAACGAGGAAGCCTTTAGGATTTCAGTT
TACTATTGCTTGTAAAAGAGATTTGCAATGTAGTGTCAAAAAAAGAAAAAGAGAGATTTG
CAATGTCGTGCTGTTTACAGGTCTAGAAAAATGTAAGTTATATATGTATACCTTTGTTCT
TCTCAGTACTTCCATTCTGTAGTCTGCACTGCGCCACAGCAATCACGGCTGGAATCGCAT
ATTTGATTTTTGACCCACCTTGCCGTTTCACCTATACGAGTGAGTTCGTATTTCAGCAAA
AAAAAAAAAAAAAGA

Homology of Contig U35_3256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39220.1	295	6e-174	protein\|tobamovirus multiplication protein, putative, expressed
Brachypodium v1_2	Bradi3g32150.1	293	5e-180
Arabidopsis v10	AT2G02180.1	303	4e-155	\| Symbols: TOM3 \| tobamovirus multiplication protein 3 \| chr2:560976-562961 FORWARD LENGTH=303