barSeed - Barley Seed Development Database

Probe CUST_14686_PI390587928

Source Contig U35_3271

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14686_PI390587928	Hv_44K_v2	AAGAGCGTTTTTGACACTACTATACTGTCAAAAATGCTTTTATATTGTAGGACGGAGGGA	1617	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67420.1	3012	2e-24	429 - 488	100	60 / 60	plus	ABC08790 ABC09211 ABC09212 ABC11724 ABC38194
MLOC	MLOC_67419.1	5964	2e-24	1806 - 1865	100	60 / 60	plus	ABC08790 ABC09211 ABC09212 ABC11724 ABC38194
MLOC	MLOC_67419.2	4695	2e-24	1830 - 1889	100	60 / 60	plus	ABC08790 ABC09211 ABC09212 ABC11724 ABC38194
JLOC1	JLOC1_44513.2	4507	8e-25	2524 - 2583	100	60 / 60	minus
JLOC1	JLOC1_44513.1	4313	8e-25	2330 - 2389	100	60 / 60	minus
JLOC1	JLOC1_44512.1	4750	8e-25	1724 - 1783	100	60 / 60	plus
Harvest21	ABC09211	1630	3e-25	1571 - 1630	100	60 / 60	plus	ABC09211
Harvest35	U35_3271	1677	3e-25	1618 - 1677	100	60 / 60	plus

Contig Sequence (1677 bp)

>U35_3271 1677 Hv_44K_v2
GATTTCCCGCCGCCTCCTTTCCTAAAAATCCCCTTCCCTTCCCTTCCCTTCCCTCTCCTC
CCGTGATTTATTTAAATTATTAAGCGTCCCTAATTTATTCGTCCCCTTCCTCGTCTACCA
CCTGCCACCCAGCAGCTTCCACGGCTCGATTTTCTCCTTTGTTTTTTCAGCCAGTATACG
CAATACGGCAATAAAATTCCGGCGCGAGCTCCGTCGGATTCGCCTCCTCCTCCGACCCAC
CGGTTCGCGTCCGGCGATCGCGCGGCGCGGGGATTCGGCTGTGGGCTCGCCGGCGGATCC
GGTTCGGGCCCTCCGGTAAGGCGATTCCGCGCGTCCTGTGCGCTAAGATCGGCGGGTTTC
AGTTCAGGGCATGGAGCGCCGCGGGTTGCTCAAGGCGGCTCTGCTGGCGTGCTTGCTCGT
CGTCTGCTCCGCCAGAGTACCTACAGTTATACAACAGCCATCCGCTAACATATACAACTC
AACCCTTGCCAAGACACTAGTGGAATATGCTGCTGCCATCTACACTGCTGATTTGACACA
ATTGTTTACCTGGACATGTGATAGATGTGGTGACCTGATCGCGGGGTTTGAGATGATGGA
CATCATCGTAGATGTGGAGAACTGCTTAGAGGCATATGTTGGTTTTGCCAGTGATATTAA
TGCTGTCATCGTTGTGTTTAGAGGAACTCAAGAAAACAGCATCCAAAACTGGATAGAGGA
CTTGCTATGGAAACAACTTGATCTTGATTACCCTGGCATGCCAGAAGCGATGGTGCACCG
AGGATTTTACTCTGCTTATCACAACACAACCATACGCGATGGAATTGTCAGCGGTATTCA
GAAGACTCGGAAATTGCATGGAGATGTTCCGATCATGGTCACAGGGCATTCAATGGGGGC
AGCTATGGCTTCATTTTGTGCACTTGATCTTGTTGTGAACTACGGGTTAGATGATGTAAA
GCTGATGACATTTGGGCAACCTCGCGTCGGCAATGCTGCTTTTGCTTCTTACTTCAAGAG
ATACTTGCCTCATGCCATTCGAGTTACTCACGCAAATGATATCGTCCCTCACCTGCCACC
GTACTTCTCGTTCTTCCCGCAGAAGACCTACCATCACTTTCCAAGAGAGGTATGGGTCCA
CAATGTCGGGCTCGGGAGCCTGGTATACACGGTTGAGAAGATCTGCGACGACTCCGGAGA
AGACCCTGCATGCAGCAGATCTGTGAGCGGCAACAGCATTCAAGACCACATAACCTACCT
GGGCGTGAGCATGCACGCGGAGGCCTGGAGCAGCTGCAGGATCGTTATGGACTACGCCGA
GCTGCGGTACAAGATGGACCTCCATGGAAACGTCGTCTTGTCGAAGCAGCAGCAACAGCA
GCCCGGTCTGTCGGACGAGCGAAGAAGACACAGCGCCCAGTGAAACCCATGTAAAGAAGT
TATGTATTATCATAGTAGCACCACGCACGCAGCCTGTCACTCCCCTCTCTGCTTCATTGT
TTCTGCATTCAGAGATGGGATAACACCACCACGCTGGACTGGAAGATGCTCTGTAAATGT
TCGTTTGGTAATGTGAAGCATTTTCCAGTAAAAAAAAAAAAAAAAATCCCATAATATAAG
AGCGTTTTTGACACTACTATACTGTCAAAAATGCTTTTATATTGTAGGACGGAGGGA

Homology of Contig U35_3271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71010.1	347	0.0	protein\|lipase precursor, putative, expressed
Brachypodium v1_2	Bradi2g27340.1	342	3e-177
Arabidopsis v10	AT5G18640.1	357	2e-136	alpha/beta-Hydrolases superfamily protein \| chr5:6213283-6215494 FORWARD LENGTH=357