barSeed - Barley Seed Development Database

Probe CUST_14680_PI390587928

Source Contig U35_3277

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14680_PI390587928	Hv_44K_v2	ATTCAAAATGCTTTGAAGACCCCAGTACACACCATTGCTACAAATGCGGGTGTAGAAGGC	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66031.3	2141	2e-24	1602 - 1661	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.4	1904	2e-24	1368 - 1427	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.1	2200	2e-24	1588 - 1647	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
JLOC1	JLOC1_43497.1	2417	8e-25	1682 - 1741	100	60 / 60	plus
Harvest21	ABC08280	1295	3e-25	716 - 775	100	60 / 60	plus	ABC08280
Harvest35	U35_3277	1299	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (1299 bp)

>U35_3277 1299 Hv_44K_v2
CATTACCAACCAAAAGAATCAGAAATGTGAACTAGACGATCCCTTGATCTTGATACACGA
TAAGAAAGTATCCAACCTTCGCTCCTTGGTCAAAGTGTTGGAGTTTGCTCTGCAGAAGCA
AAAGCCTCTGCTTATTGTTGCAGAAGATCTAGAAAGTGAAGCACTGGGTACACTGATTCT
TAACAAGCTTCGTGGGGGCTTCAAGGTCTGTGCGATCAAAGCTCCTGGTTTTGGAGAGAA
CAGGAAATCCAATTTACAGGACCTTGCTATCCTTACTGGTGGAGAAGTCATAACTGAAGA
ACTTGGAATGAACCTTGAGAACTTTGAGCCTAGCATGCTGGGTACCTGCAAGAAGGTTAC
CATATCTAAGGATGACACTGTCATCCTTGATGGAGCGGGTGATAAGAAGGCCATTGAAGA
AAGAGCTGAGCTGCTGAGATCTTCAATTGAGCAATGCACTTCTGACTACGATAAGGAAAA
GATACAGGAGCGGTTGGCAAAGCTATCTGGTGGAGTTGCAGTCCTGAAGATTGGTGGGGC
GAGTGAAGCAGAAGTAGGCGAGAAGAAGGACAGAGTGACGGATGCGCTAAATGCTACAAA
AGCTGCCGTAGAGGAGGGTATTGTACCAGGTGGTGGTGTTGCCCTTCTTTATGCATCAAA
GGACTTGGATAAATTGCCTACAGCAAACTTTGACCAAAAGATCGGTGTCCAGATCATTCA
AAATGCTTTGAAGACCCCAGTACACACCATTGCTACAAATGCGGGTGTAGAAGGCGCTGT
CATTGTTGGCAAGCTCTTGGAGCAGGATAATACTGACCTGGGCTATGATGCTGCCAAAGG
TGAATATGTGGATATGGTGAAGGCTGGTATCATTGACCCACTTAAAGTGATCAGAACAGC
GCTGGTTGATGCTGCAAGTGTGTCGTCTCTGATGACTACCACGGAAGCCATCATCGTTGA
GATACCCAAGGAAGAGAAGTCGGCCCCGGCAATGGGAGGCGGCGGCATGGGCGGGATGGA
GTTCTAAACTGCTCTGCGGAACAATGGGAGGCGGCGGCATGGGCGGGATGGAGTTCTAAA
CTGCTCTGCGGAACAATGTGATTATACGAGGCACTTAGGTTAGACCTTTTTTGCGGTGTG
GAATCATCGTTATGTAGTGCAGAGTGGATGAGGAGGCTGTCACATTTTTTGTTGTCCTGC
AAGAGGATGTTGCAACTTGAATCATCTGAACAGATGTACGACTGAAACAAGCCCGAAATG
CCCCTGTTACAATATTTTGAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04970.1	578	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi1g75520.1	576
Arabidopsis v10	AT3G23990.1	577	\| Symbols: HSP60, HSP60-3B \| heat shock protein 60 \| chr3:8669013-8672278 FORWARD LENGTH=577