barSeed - Barley Seed Development Database

Probe CUST_14678_PI390587928

Source Contig U35_3279

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14678_PI390587928	Hv_44K_v2	GTCTTGTCTTGAGTTAAAACGTATTGGTTTCTGGTGTGTCCTGTTGCTGGTCTGGACTCT	1509	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.372	1.228	1.067	0.898	0.497	0.462
Raw	23265.767	31550.967	24792.433	31969.600	6404.443	6498.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70666.2	2023	2e-24	118 - 177	100	60 / 60	minus	ABC07730 ABC20966 ABC37634
MLOC	MLOC_70666.1	1925	2e-24	121 - 180	100	60 / 60	minus	ABC07730 ABC20966 ABC37634
JLOC1	JLOC1_46907.1	1875	8e-25	1652 - 1711	100	60 / 60	plus
Harvest21	ABC07730	1737	3e-25	1573 - 1632	100	60 / 60	plus	ABC07730
Harvest21	ABC37634	411	6e-22	95 - 154	97	58 / 60	minus	ABC37634
Harvest35	U35_3279	1671	3e-25	1510 - 1569	100	60 / 60	plus

Contig Sequence (1671 bp)

>U35_3279 1671 Hv_44K_v2
GGATGCGGGCATCCGGGAAGATTTCAAGGCTGCAGTGGAGACGCACAAGGCGAAGAAGGC
AGCCCCCCCGCCGGAGGTTCCCCGCCGTCCTGATCCGGCCGGTTTCGTTCGGTGCCGTCG
AGTTCGTCTCCCCGGCGCAAGGATGGCGGACGAGGAACATACTCAAACTTCTAGGAAGAG
GGTTGCAGAAAAACAAATCAACAAGGATCATCCTGAGCCTGATGATGACTCGTCGGAACA
AGAAACAGGAACATTTAAGAAAGCCAGTGAGGAAGTGATGGCAACCCGAAAGATTGTAAA
GGTTCGGCGTCAGCAGCCGTCAGCAGCTCCTTCTTCTAATCCTTTCTCTGCAATTAGATT
CACCCCCAGTGATCCTGTTGTTCAAGCAAATATCACAGTCTCAGAACCTCCACCTTCTGA
TGTTAGCAATGGAAGTGGGAAAGAGTCAGATGCAAAAAACAAGTCCAGTGCCCTAACTGA
AGCACCCTCTCAACTTGATGAGTCAGATAGCAAGGCAGAAGACACAGTGGATGGAACTGG
TGAGAACAAAGTGGTTGTTGAAGAACCCAAGGAAGATAACACCAGGACATCTGGAATTGA
GGGCAAACCAGAAGATGGAGATGCTGAAGAGAAGAAATCAGTAGATGAAGCTGGAGGTGA
GGATAAAATCTGCAAAGATGATGATGAGAAGAAAGATGAAGCTGAATCAGGGGCCAAGGA
TGGACCTTCTGAGCAGAAGGATGCTGATAACAAAGGGCAGTCATCATCACAGACGCCTCT
TTTCTCCTTCACCAATCTGTCAAGTGGCCAAAATGCTTTCACGGGACTGGCTGGAACTGG
ATTTTCAGGCTCATCATTTTCATTTGGCTCAGGCTCTAAAGACAGCTCAAATGCTCCCCT
GTTTGGGCTAAAGAGTGATGGCTCATCATTCCCTTCTTTCAACATTGGTGCTACCAACAA
CGGGAGCTCTGCCCCAGCACTCGGCGTTGCAGCGGAGGCGCCGAAGAAATTTGCCATGTC
AGAGGGCCCAGTTGAAACTGGCGAAGAGAACGAGAAGGCTGTGTTCACTGCTGACTCTGC
AATATATGAGTACCTCGATGGTGGCTGGAAGGAAAGAGGAAAGGGTGAACTGAAGCTGAA
CATCCCGGTATCTGGTGGCGAGAGATCTCGGCTCGTCATGAGGGCCAAGGGCAACTACCG
GCTCATTCTGAATGCAAGCCTTTACGACGACATGACGCTGAAGGACATGGACAAGAAGGG
CGTGACGTTTGCTTGCATCAACAGCATCAGCGAATCACCGAGCGGGCTCACCACATTTGC
TCTGAAGTTTAAGGATGCGGGCATCCGGGAAGATTTCAAGGCTGCAGTGGAGACGCACAA
GGCGAAGAAGGCTTCAGACGCGCCGAAGAGCCCAGAGAGCTCCCCGAAGGCTTCCGACGT
TTGAAACCCACCCCGGTTCCGCGTTTTGATGTGTATGTGTCAGAGCAGGTGTTCCTTGCT
CTTCCCGGAGTCTTGTCTTGAGTTAAAACGTATTGGTTTCTGGTGTGTCCTGTTGCTGGT
CTGGACTCTGGAACGGTGGGTGGTCTGTCGAACTTTAATTAAAGTCATAATTTTAGTAAA
AAAAAAAAAAAAAACTCTTTCCGGCCAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28190.1	473	7e-163	protein\|ranBP1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g33130.1	446	0.0
Arabidopsis v10	None