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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14677_PI390587928Hv_44K_v2AGACACAGTGGATGGAACTGGTGAGAACAAAGTGGTTGTTGAAGAACCCAAGGAAGATAA582GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5591.1101.1151.0620.6470.484
Raw 438.960447.201424.562613.846133.236112.700



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_70666.220232e-241108 - 116710060 / 60minus ABC07730 ABC20966 ABC37634
MLOCMLOC_70666.119252e-241111 - 117010060 / 60minus ABC07730 ABC20966 ABC37634
JLOC1JLOC1_46907.118758e-25662 - 72110060 / 60plus
Harvest21ABC0773017373e-25583 - 64210060 / 60plusABC07730
Harvest35U35_32806453e-25583 - 64210060 / 60plus
Harvest35U35_327916713e-25520 - 57910060 / 60plus



Contig Sequence (645 bp)

>U35_3280 645 Hv_44K_v2
TCGGCTCACGCCTTCGTCGCCCGCTTCCCCTCCCTAGGTTTTCTTCGCGCTGCTCCTCCC
CGGCCACGCCTCCGTCCGAGCTCGTCGCTGCCCTCCGTAGCGGCTCGCCCTGGTCGTCGG
CGCAGCCCCCCCGCCGGAGGTTCCCCGCCGTCCTGATCCGGCCGGTTTCGTTCGGTGCCG
TCGAGTTCGTCTCCCCGGCGCAAGGATGGCGGACGAGGAACATACTCAAACTTCTAGGAA
GAGGGTTGCAGAAAAACAAATCAACAAGGATCATCCTGAGCCTGATGATGACTCGTCGGA
ACAAGAAACAGGAACATTTAAGAAAGCCAGTGAGGAAGTGATGGCAACCCGAAAGATTGT
AAAGGTTCGGCGTCAGCAGCCGTCAGCAGCTCCTTCTTCTAATCCTTTCTCTGCAATTAG
ATTCACCCCCAGTGATCCTGTTGTTCAAGCAAATATCACAGTCTCAGAACCTCCACCTTC
TGATGTTAGCAATGGAAGTGGGAAAGAGTCAGATGCAAAAAACAAGTCCAGTGCCCTAAC
TGAAGCACCCTCTCAACTTGATGAGTCAGATAGCAAGGCAGAAGACACAGTGGATGGAAC
TGGTGAGAACAAAGTGGTTGTTGAAGAACCCAAGGAAGATAACAC



Homology of Contig U35_3280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g33117.14741e-54
Arabidopsis v10None