barSeed - Barley Seed Development Database

Probe CUST_14673_PI390587928

Source Contig U35_3284

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14673_PI390587928	Hv_44K_v2	CATGCAGAAGAATGCAAAATAAATAAATTGTACTTTATCCAGCAGTGGCATGCACTGTAT	2099	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30712.1	3577	2e-24	2173 - 2232	100	60 / 60	plus	ABC08164 ABC38375
MLOC	MLOC_30711.1	3780	2e-24	2607 - 2666	100	60 / 60	plus	ABC08164 ABC38375
MLOC	MLOC_30711.3	3643	2e-24	2603 - 2662	100	60 / 60	plus	ABC08164 ABC38375
JLOC1	JLOC1_20281.1	2876	8e-25	2720 - 2779	100	60 / 60	plus
Harvest35	U35_3284	2175	3e-25	2100 - 2159	100	60 / 60	plus

Contig Sequence (2175 bp)

>U35_3284 2175 Hv_44K_v2
GAAAGAAACGCTCAAGGCTCTGGAGTACCTTCATAGGCAAGGACAGATCCATCGTGATAT
CAAGGCTGGTAATATCCTTATTGATAGTGCTGGCGTAGTGAAGCTTGGGGACTTTGGTGT
TTCTGCTTGTATGTTTGATAGAGGTGATAGGCAAAGATCTAGGAACACATTTGTTGGAAC
TCCATGCTGGATGGCTCCAGAAGTGCTCCAGCCTGGCACTGGATATAACTTCAAAGCCGA
TATATGGTCGTTTGGAATCACTGCACTTGAACTAGCGCATGGACATGCTCCATTTTCGAA
GTACCCTCCTATGAAGGTTCTTCTCATGACTCTCCAGAATGCGCCACCTGGTCTTGACTA
TGACCGAGACAGAAGATTTTCGAAGGCATTTAAAGAGATGGTTGCGATGTGCTTGGTAAA
AGACCAAACAAAGAGGCCGACGGCTGAGAAGTTGCTCAAGCATTCATTTTTCAAAACTGC
AAAACCTCCAGAATCGACAATGAAGGGTATCTTAACTGATCTACCTCCTCTATGGGAGCG
TGTAAAGGCACTCCAGCTTAAAGACGCAGCACAATTGGCTTTGAAGAAGATGCCTTCTTC
TGAGCAGGAGGCACTTTCCCTGAGTGAATACCAGCGAGGTGTTAGTGCGTGGCACTTTGA
TATTGAAGACCTCAAGGCTCAAGCATCACTAATTTATGAAGATGAACCATCTGAAATGAA
AGAAGATGATGTTGCTGCAAGAATCACTGAATCTGAAAAGAGTTTATATTCGAGGAACCC
TTCAGGACAGTCGCCATCTGCAAATGAAAACGCCTGCAGTGAAGAAACCTGTACGACGAA
TCCTGATTGTAGAAGGATGCCCAATGGACATGCAAATTCTAGATCAGAGAATGATTCATT
GCCCTCTACATCAAAGGAACCAGAGTCAAAATATTGGAGAACTAATATTGGACAGAAACA
ACAGACTTCTGGGGCTCCAGTTGAAGGTGGTGTTAATAGCTCAACAACTGAAAGGAGCCA
TAATTTTGAAAGGGATGCAACTGGTGACAAACATGGAAGTGATACGAGAAGAGCCGCAAA
TCTTAGTGGTCCGTTATCATTGCCAACTCGTGCCTCTGCGAACAGTTACTCAGCTCCTAT
ACGATCTTCAGGAGGATATGTAGATTCATTGGGAGATAAATCTAAACGTAGCGTCGTGCA
TATTAAAGGCCGCTTTTCTGTGACATCTGAGAACGTTGATCTTGCAAAGGTTCAGGAAAT
TCCATTGAGTAGCATCTCACGCAAATCACCACATGGTATACAGCTAAGAAAATCTGCAAG
TGTTGGTGATTGGATTGTCAATGCCAAACCAACGTCTAACAGTCATCATCTGAAGGAACT
CTGCAATAGCTCGGTATCATCGTCTATTCTCATTCCCCACCTTGAGAACCTCGTGCAACA
GACTACGCTTCAGCAAGATCTGATCGTGAACCTACTAAGTAGCATGCAACAGAATGAGAA
AGCTGACGGTGCACAGTCTGGAACGTCGTCGCAAGTCCGAAATATGCAAAGTGGGACAGT
GGTTGAAACATCTAATACTGAGAAAGAACGGTCATTACTTGTTAAAATTTCAGAGCTGCA
GTCTAGAATGATTACTTTGACTGATGAACTGATTTCAGCTAAGCAAAAACATGTTCAGTT
GCAGCAAGAGCTTAATGCGTTATACTGCCGAGAAGAAATAGAAGACATTAGGGACGAGGA
CAACGAGGAAACATAGCAAGGTGAAATGTTCAGCTGATATGGGTACCCGCACTTAGCTTT
TGCAGCATCAAGAGTTTCATAAGAGAAGCAGTACTTGCATAAGCTATATATATATATATC
AACCGAATAAGCGCCGTCAGAAGAAGAAAATGGTCGTTGAAGGTGGACGTGCTCTTTGGC
CTGTTGCCATCAGTGTGTATATTAGTTTTTATTTAGCTTCTTTTTCGGTTTAATTTATTC
AATAGGTTTTTGGTGGGTCATAAATTGCGGTCCTGTGTATTCCCTGCTATGGCCACACCT
ATCATTCAAACATTTGTGATTATCCCGTAGATTGTGTAGGTGCCCGTTGGTTCGAACAGC
ATGCAGAAGAATGCAAAATAAATAAATTGTACTTTATCCAGCAGTGGCATGCACTGTATA
AAAAAAAAAAAAAAA

Homology of Contig U35_3284 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g37480.1	742	protein\|STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi3g31110.1	745
Arabidopsis v10	AT4G24100.1	709	Protein kinase superfamily protein \| chr4:12515223-12519336 FORWARD LENGTH=709