barSeed - Barley Seed Development Database

Probe CUST_14671_PI390587928

Source Contig U35_22531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14671_PI390587928	Hv_44K_v2	AAGCTCAAGAAGAGCAGCATAGAGAAGATGACGAGGAACAGGAACTTCTTCGTGATGCTA	1116	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375835	2619	2e-24	1663 - 1722	100	60 / 60	plus	ABC19803
MLOC	MLOC_25676.3	2269	2e-24	1138 - 1197	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.4	2072	2e-24	1038 - 1097	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.2	2151	2e-24	896 - 955	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.1	2042	2e-24	896 - 955	100	60 / 60	minus	ABC19803
JLOC1	JLOC1_17501.1	2237	8e-25	1200 - 1259	100	60 / 60	plus
Harvest35	U35_22531	1176	3e-25	1117 - 1176	100	60 / 60	plus

Contig Sequence (1176 bp)

>U35_22531 1176 Hv_44K_v2
GGCCTGCAGGCCGGCTTCCCCCACCGAACCGAATCCACGCGCTGCTCCGGGGAAGGTTTC
TGCGGAACGGCGGATTGCCGGAGGAGGAGAGGAGGCAGCCGTCGGTGGCCGCCAGGGAGC
TCGGGCAGCTGCGGCAGCGCCACCCAGTCTCGGGCCTGAGATTGGAGAATCTCATGCGAG
GTCAAGCAGCTAGCCGGTCGGATTCATCTTCAGCTCAAACTGTTGACCTCTCCACCAATG
ACCATTCTGAATCAAGCCATACTGCTTCCGAAGACGCTCAGGGCACACGTCAACAACAGG
CAAACGATAATGTTGATCTTCACCGGATTGGAGATACAGCAACGGCATCAGATTATGGAA
GCAATGCTCCTAGTATTGCTGAAGGATTGTCCGAACCTCATAGTCAGGAGGAGGGTTGGC
AGGAAGATCTGGAAGTGGTGGATAGAAGAAGAGACTGGGATCAGTTTTCCCATGCTATTA
CTACTACTGGAGAGGGATCCGAAAGAAATTGGCTTGAAAATGCAGACAGCAGTTCATCAT
CGTCTGATGAGAGGACAATGGAGGCTGGAGATCATCAAGAGGTGTCGTATCTTCTGGAAA
CAAGCGACGAGTCAACAATTAGTGATAATAATCTTCCTGAAGCACATGAAGAGCAGCTTG
ACAGTAACCATCTCCCCGAAGCGCTTCAAGACAATAATCATCTCCAAGAAGCGCGTGGAG
AGTGGAACGGGGAGGGTAATGACCCCACAGAAGTGCGTGATGAGTGGCACAGTGACGATC
ATTTTCCAGAAATAAATGAAGTGTGGCACGACGACGATGAGTCCAATGGGAGTGCGCATA
ACTGGCATGACGATCATTCAGAGCAACCGGTTGACCAGGAGTCTACGCTCATCAGACGAG
CTAATACATTTACCCCTGGTGATGATGATAATGTGTACAGCACAGAACTAAGGGAGCTTC
TAAGCAGGAGGAGCGTTTCTAATCTCCTCGACAGCGCTTTCCGTGAAAACCTAGACCGAC
TTATCCGGTCATACGTTGAACGGCAAGGTCGTGGTCCTCTCTCTTTGAATCTGGAAGGAA
CACCTGCGGCAGCAGCTGCCCCTGAACCGCAGGAGCAAGCTCAAGAAGAGCAGCATAGAG
AAGATGACGAGGAACAGGAACTTCTTCGTGATGCTA

Homology of Contig U35_22531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39690.1	659	1e-119	protein\|protein binding protein, putative, expressed
Brachypodium v1_2	Bradi4g38750.1	713	1e-162
Arabidopsis v10	None