barSeed - Barley Seed Development Database

Probe CUST_1466_PI390587928

Source Contig U35_30008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1466_PI390587928	Hv_44K_v2	ACTACAGTGCTCTGCTATGGCATCGCCTGATGGGAACCAAGGTCCTGGAAGCGAGGTTCA	186	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359427	1946	7e-23	1318 - 1377	98	59 / 60	plus	ABC10851
MLOC	MLOC_36964.4	1541	7e-23	901 - 960	98	59 / 60	plus	ABC10851
MLOC	MLOC_36964.2	1674	7e-23	1010 - 1069	98	59 / 60	plus	ABC10851
MLOC	MLOC_36964.1	3433	7e-23	917 - 976	98	59 / 60	plus	ABC00385 ABC00840 ABC10851 ABC42711
JLOC1	JLOC1_23868.1	2419	4e-23	917 - 976	98	59 / 60	plus
Harvest21	ABC29629	505	3e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_30008	505	3e-25	187 - 246	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_30008 505 Hv_44K_v2
GGGAGTCCGGAGGTGCTTACAACAGTGGGCATCACCTTGTCACCGATGCATTTGTCTTCA
GCTTCTGGTTCCTGGATCAGCTGGGCATGTCAGCGAAATTCGACACCAAGAGCTACTGTA
GGCAGAGCTTCATCGGTGGCAACTATGGCCTGCTGAACACAACCACATTCCAGCCAAATC
CTGACTACTACAGTGCTCTGCTATGGCATCGCCTGATGGGAACCAAGGTCCTGGAAGCGA
GGTTCACCGGCACCAACATGGTCCGCGCCTACGCGCACTGCGCAAAACATGCCCCGGGGA
TAACCCTGCTGCTCATCAACCTGCACCGCAACGCGACGAACCACGTCACGGTGGCGAGCT
CAAGCGGCGCGCACGCCGGAGCCGCGAGGAGGCACGGCCCACGGTTCGGGCAAGCGGCGG
GGGCGGCGAAGGAGGAGTACCACCTCACGCCCGAGGGCGGCGACATCCATAGCCACGTGA
TGATGCTGAACGGCAAGGCGCTGGT

Homology of Contig U35_30008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08090.2	526	3e-75	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g47760.1	539	1e-80
Arabidopsis v10	AT5G34940.2	536	2e-56	\| Symbols: AtGUS3, GUS3 \| glucuronidase 3 \| chr5:13235912-13238718 REVERSE LENGTH=536