barSeed - Barley Seed Development Database

Probe CUST_14665_PI390587928

Source Contig U35_22537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14665_PI390587928	Hv_44K_v2	TTCCATGCAATGCATCCGCCACCGCCTTTACTAGCAACCATCCAGGAAGACGACGAGCTG	94	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356422	2184	2e-24	53 - 112	100	60 / 60	plus	ABC22198
MLOC	MLOC_66355.4	2302	2e-24	1917 - 1976	100	60 / 60	minus	ABC22198
MLOC	MLOC_66355.2	1752	7e-23	1481 - 1540	98	59 / 60	minus	ABC22198
MLOC	MLOC_66355.1	1808	7e-23	1525 - 1584	98	59 / 60	minus	ABC22198
MLOC	MLOC_66355.3	2550	7e-23	2107 - 2166	98	59 / 60	minus	ABC22198
MLOC	AK359487	2171	3e-21	2 - 55	100	54 / 54	plus	ABC22198
JLOC1	JLOC1_43713.1	2505	4e-23	2158 - 2217	98	59 / 60	minus
Harvest21	ABC34655	441	1e-23	95 - 154	98	59 / 60	plus
Harvest35	U35_22537	683	3e-25	95 - 154	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_22537 683 Hv_44K_v2
GACCGAGCAAGCCAAACCAAGCCCAATCATCCAAGCTTCACTCGAGCTCACGCCAACACA
AACGATAAAGCTAGCGACCACGAAGCTCATCTTCTTCCATGCAATGCATCCGCCACCGCC
TTTACTAGCAACCATCCAGGAAGACGACGAGCTGGCGAGCGAGCCCATGAAGCGCGGAGG
AGTAGAAAGCGGCAGGTGCGAGGTGGAGGCCGCGGGCATCAACTACCACATCACCGTCTC
CGCCCGGCCTCACCCGCTCAAGATATGGAGCAGGCCCGACGACCTCCTCCTCGACCCTGC
TGCGCCCGCGCCTCCGCCGCTCAGCCGCAGCAGCCGGTGCCGCCTCGTCCTCCGCAACGT
CGGCTGCCGCGCCCGCCCCGGCGAGCTGCTCGCCATCGTCGGCCCCAGCGGCGCCGGCAA
GTCCACGCTGCTCGAGATCCTCTCCGGCCGCCTTCAGCCCAGCTCCTCCCCTCCTACTGA
CCTCCGCGTCAATGGCTCCCCCGTCGACGCCGCGGCCCTGCGCCGCCTCTGCGGCTACGT
CACCCAGCGCGACGTCCTCTTCCCTCTGCTCACCGTGCGCGAGACGCTCCACTTCAGCGC
CCGCCTCCGCCTCGGCCCGGACGCGTACGATCCCGCCGCGGTCGACGCGCTCGTCGACGA
CCTCGCGCTGGCACGCGTCGCCG

Homology of Contig U35_22537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None