- Probe CUST_14664_PI390587928
- Source Contig U35_22538
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14664_PI390587928 | Hv_44K_v2 | AACATCCTCCTCACGGACGGCTTCGAGCCTCAGTTGTCGGATTTCGGGCTCGCGATCTGG | 435 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.221 | 0.246 | 0.932 | 1.940 | 1.269 | 1.573 |
| Raw | 2.835 | 6.712 | 29.221 | 100.329 | 21.901 | 29.685 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364821 | 2546 | 2e-24 | 1709 - 1768 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59692.3 | 1098 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59692.4 | 1186 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59692.2 | 4697 | 2e-24 | 616 - 675 | 100 | 60 / 60 | plus | ABC10725 ABC30770 |
| JLOC1 | JLOC1_38860.2 | 4674 | 8e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38860.1 | 4692 | 8e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17973 | 570 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22538 | 570 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus |
Contig Sequence (570 bp)
>U35_22538 570 Hv_44K_v2 CGGTGCCGGTGGTTCCGGTACGAGGAGCTGTACGACGCCACCAACCACTTCTCGCCGGGC AACCTGGTGGGCAAGGGCGCGCACAGCAGGGTGTACCGCGGCGGCCTGGCGAGCGGGCAG CGGGTGGCGATCAAGCTGTGCCGGGCGTCGGCGGAGGCGTCCAAGGACTTCCTCCGGGAG GTGGACATCATCACCAAGCTGCAGCACGGCCGCATCGTGCCGCTCGTCGGCGTCTGCGTC GAAGGCCCCAACCTCATCTCCGTCTACCGCTACCTCCCACGAGGCAGCCTCGAGGACAAC CTGCACGGGAAGAGGTCCAAGCCGGCGCTGCCGTGGGAGAAGAGGTACAGGGCGGCGGTC GGGGTTGCCGAGGCTCTGAGCTACGTGCACTCCGGCGGCTCCCGGCCGGTGATCCACCGC GACGTCAAGTCCTCCAACATCCTCCTCACGGACGGCTTCGAGCCTCAGTTGTCGGATTTC GGGCTCGCGATCTGGGCGCCGTCCAGCCCGTCGTCCCTGACGCACAGCGACGTCGTCGGC ACCTTCGGGTACCTTGCGCCGGAGTACTTC
Homology of Contig U35_22538 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g13820.1 | 653 | 4e-112 | protein|protein kinase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g68487.1 | 653 | 3e-119 | |
| Arabidopsis v10 | AT1G77280.1 | 794 | 2e-69 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr1:29031468-29035882 REVERSE LENGTH=794 |