barSeed - Barley Seed Development Database

Probe CUST_14652_PI390587928

Source Contig U35_10563

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14652_PI390587928	Hv_44K_v2	ATGATGATACAAGACAATGTTGTGAGTTTGAGAACAAACTGACCTTCAGAAATGAGCCAT	826	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.772	1.772	1.158	0.911	0.362	0.362
Raw	1420.030	2303.634	1291.726	1593.392	223.073	241.860

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374915	886	2e-24	808 - 867	100	60 / 60	plus	None
MLOC	MLOC_63270.2	982	2e-24	8 - 67	100	60 / 60	minus	None
JLOC1	JLOC1_41432.2	1076	8e-25	879 - 938	100	60 / 60	plus
Harvest21	ABC22983	886	3e-25	827 - 886	100	60 / 60	plus
Harvest35	U35_10563	886	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_10563 886 Hv_44K_v2
CCCCGGTGCGCCCCTATCGTCCGGCAAAGCGTCGAGCACATGGCGCGCGCCCTCCTCCGC
CGCCGCGGCGCGCTCTCCTCTCTCCTCTCCCCGGCCGCTCCCACGGCGCCCAGGCTGGTC
CCGTCATTCTCCTCCGCCACCGCCGTCGCGCCGCTGCGCTCCCCGCTCGACGAACGCCTG
CTCCGCCTCCTGCGATCCGAGATCTCCTACGCCGCCGACCGCCGCCCTCCCCACCAGCCG
CCGACGGGCTTCAAGTCGTTCGCCGTGGAGGACCGCCCGGGGGAGCAGTGGGTGCGCCTC
CGCGCCGCCCGCCGAGGCGCCGGGTCCCGGACCGAGGAGGAGGCCATCAAGATCGACGCC
ACCTTGTTCGACGGCGTCGCGGAGACGCCCCCCGACGCGTCCCTCTTCCACCGGGTCGAG
GCGCTGGAGCAAGGGCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTGGCCCGCGCCGAC
CGCGTCCTGGGATTCATCTGCTCCGCCTGGCCCGACCAACTTACCGTCCGCCACGTGCTC
ACCCTCAGGGGCGCCGGCGCCGCCACCGACGACCGGGGTGCCCGCGAGTTCACGAAGCTG
GAGCCTGCGGAGAAGGAGGCGGTGAAGAAGTTCCTGCTGGAGAGGGAGGTGGACGCCGAG
CTCGCGGAGTTCTTGCACGACTACGTTGCGAACAAGGAGAAGATGGAGCTGCTCCGGTGG
CTGAAGACAGTCGAATCGTTCGTCGAGAAGTAAGCTAAGGAGTTGCAGGCTTGTTAGCAG
GTGATTTTTTTCATGCTCATACGTATGTTCAGAGTTATGGAGATGAATGATGATACAAGA
CAATGTTGTGAGTTTGAGAACAAACTGACCTTCAGAAATGAGCCAT

Homology of Contig U35_10563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38500.1	225	1e-78	protein\|mitochondrial glycoprotein, putative, expressed
Brachypodium v1_2	Bradi4g37650.1	225	5e-85
Arabidopsis v10	None