barSeed - Barley Seed Development Database

Probe CUST_14651_PI390587928

Source Contig U35_10564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14651_PI390587928	Hv_44K_v2	GTGATACAGCGAATGTTGCGATGAGAAATTTTGCAATAGTCATCTGTTCCTGTCAAAAAA	523	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.969	1.580	1.361	0.998	0.237	0.264
Raw	295.222	756.430	576.845	682.769	55.982	65.922

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371276	4719	2e-23	70 - 127	100	58 / 58	minus	ABC23762
MLOC	MLOC_6734.4	3185	2e-23	2793 - 2850	100	58 / 58	plus	ABC23762
MLOC	MLOC_6734.3	3272	2e-23	2870 - 2927	100	58 / 58	plus	ABC23762
JLOC1	JLOC1_4401.4	4485	1e-23	1562 - 1619	100	58 / 58	minus
JLOC1	JLOC1_4399.2	6886	1e-23	2791 - 2848	100	58 / 58	plus
JLOC1	JLOC1_4399.1	4832	1e-23	737 - 794	100	58 / 58	plus
Harvest21	ABC23762	594	3e-25	524 - 583	100	60 / 60	plus	ABC23762
Harvest35	U35_10564	594	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_10564 594 Hv_44K_v2
GGTTCCTCCACAGCCAGCTCCACCATTTCCTCCCCACGAACACGAGCGAGACGAGAGTCA
TGGCTAGGGTTTTCCTCACCGCCGTCGTCGCCGCCGGCCGCGCCGTCGCCCGCGCGGCCT
CTCGGGCGGGCAAAGGGCCTCTCCTCATGGGCGGCATCATCATCACTGCCTACGTGTACC
GCGAGCACCTCCGCCGCCTCGCGCACCGCCTCTTCGCTTCTCGTCCCGGGTCAGATCGGG
CTTCGAGGATCAAGGCGGCCCGCGCGGACAACAAAGGGGCGCGGAAGGTCCTGCAGGCGG
CGCACCGCTTCTACACAAAGAGGATCGGGTCGGCCCCCCGCTGAATATCAGGCCTACTGG
AATACGGACATGGACATAGTGGACAGAGGAGTGGTTTACAAATGGAGATGAAATTTTGGC
TAAGGAACTTATGGGTTTAATCGAATTCCTGCTATCATGTTATGATCGCTGAATCTAAGA
CTTGTGCCATCATCTATTGCTGTTGAACCAGTGGACCAATGTGGTGATACAGCGAATGTT
GCGATGAGAAATTTTGCAATAGTCATCTGTTCCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None