barSeed - Barley Seed Development Database

Probe CUST_14650_PI390587928

Source Contig U35_10565

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14650_PI390587928	Hv_44K_v2	AAAGAACGACTAAGCAAGCTTGAAGCTGAACTAGAATCCCTCAAGCAGAAGCAGAAAAAC	419	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.789	0.717	0.916	1.336	1.993	1.794
Raw	31.680	41.846	49.912	103.765	59.229	57.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357652	3152	2e-24	1697 - 1756	100	60 / 60	plus	ABC11778
MLOC	MLOC_36465.1	2269	2e-24	647 - 706	100	60 / 60	plus	ABC11778
JLOC1	JLOC1_23481.1	2249	8e-25	617 - 676	100	60 / 60	plus
Harvest21	ABC23941	529	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_10565	529	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (529 bp)

>U35_10565 529 Hv_44K_v2
GGTTGAAACCAATGTTAGGCCGTGGGGAACTCCGTTGCATTGGGGCAACAACATTAGATG
AGTACAGGAAGTATATCGAGAAAGATGCTGCTCTTGAGCGTAGGTTCCAGCAGGTTTACT
GTGGTGAACCAGCAGTTGAGGATACAGTTTCTATACTACGTGGCCTACGAGAGCGGTATG
AGATGCATCATGGTGTTAAGATATCAGATGGTGCTCTTGTTGCTGCAGCTGTTTTATCAG
ATCGCTACATCACTGGACGATTTTTGCCTGACAAAGCTATTGATCTAGTTGATGAAGCGG
CAGCTAAATTGAAAATGGAGATTACATCAAAACCTATTGAGTTGGATGAGGTCGACAGGG
AAATCATAAGGTTTGAAATGGAGAAGCTCTCATTGAAGAATGATACTGACAAAGCCTCCA
AAGAACGACTAAGCAAGCTTGAAGCTGAACTAGAATCCCTCAAGCAGAAGCAGAAAAACC
TTNNAGAACACTGGGAGTACGAGAAATCGTNGNTGACTCGTATAAAATC

Homology of Contig U35_10565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08490.1	984	2e-90	protein\|chaperone protein clpB 1, putative, expressed
Brachypodium v1_2	Bradi3g06107.1	988	1e-90
Arabidopsis v10	AT5G15450.1	968	4e-76	\| Symbols: APG6, CLPB3, CLPB-P \| casein lytic proteinase B3 \| chr5:5014399-5018255 REVERSE LENGTH=968