barSeed - Barley Seed Development Database

Probe CUST_14639_PI390587928

Source Contig U35_22548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14639_PI390587928	Hv_44K_v2	AGTTTCATGATTATCTACAGTCCAAGGAACACCAAAATCTTATGGGTGGTGCGCTGACAG	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10915.3	3612	7e-23	578 - 637	98	59 / 60	plus	None
MLOC	MLOC_10915.2	3665	7e-23	314 - 373	98	59 / 60	plus	None
MLOC	MLOC_10915.1	3748	7e-23	437 - 496	98	59 / 60	plus	None
JLOC1	JLOC1_7182.2	3599	4e-23	277 - 336	98	59 / 60	plus
JLOC1	JLOC1_7182.1	3740	4e-23	421 - 480	98	59 / 60	plus
Harvest35	U35_22548	666	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_22548 666 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCTGGCGTCCATTCCCCCACTCGCTGCAACTGCTCCAGGG
AAAAAAGGGAGTGAGCCGCGGAACAAAAATTCTCCATCGCTTCCGACTCCTCGATCCAGT
CGGAGCGGCGCCGGAACGAATGCGGGAAGCGGAGGCCGCCGCCGCTCCATCTGGTATTTG
AAGTGGACGAGGAGCTGATTCGATCTATAAAAATTGTAGTATAGGAGTTGGGGTCTGCGC
TTGTAGTTGTGGGCAAAATGGAGAGGAGAGTTGCTGGCGACGTGGAGCTTGATTCTGCAG
TGTTCCAAGTGTCCTTGACCAAAAACAGGTATGAGGCAATTGCTTGTAATGGGGAGAGCG
CCGAATCAGTAGCATCTGGTCCTTTTGACCAACTAGTCCTGCACTTGGAAGATGCCAAAA
ATTTCCAATCACGTTCATCAAGTGGCTCTTTTAAGCTGTTATTGTCTGGGGATGGAAAAG
GCTCTACCTGGTTCACAAAATCCACCTTAGAGAGATTCCTACATATCGTAAATTCGCCTG
ATGCATCAAAAACGGCGAATGGAATTTTACAGGAAATGTCTCAGCTGGAGGAAACTAGAA
AGTTTCATGATTATCTACAGTCCAAGGAACACCAAAATCTTATGGGTGGTGCGCTGACAG
GTGGTC

Homology of Contig U35_22548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g63500.1	1064	6e-51
Arabidopsis v10	None