- Probe CUST_14632_PI390587928
- Source Contig U35_34526
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14632_PI390587928 | Hv_44K_v2 | TGATTGTACGACGAGCATAAGAAAGTTTGTGCATGTACAGTAGATTGAACTGCGCAGAAA | 204 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.190 | 0.276 | 0.547 | 1.953 | 2.158 | 5.288 |
| Raw | 257.788 | 596.604 | 1030.774 | 5541.250 | 2082.350 | 5931.403 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72277.1 | 1028 | 3e-22 | 935 - 990 | 100 | 56 / 56 | plus | None |
| JLOC1 | JLOC1_48070.1 | 937 | 1e-22 | 750 - 805 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC52389 | 601 | 5e-23 | 501 - 556 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_34526 | 300 | 3e-25 | 205 - 264 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50304 | 601 | 5e-23 | 501 - 556 | 100 | 56 / 56 | plus |
Contig Sequence (300 bp)
>U35_34526 300 Hv_44K_v2 GCGCGCATTGTGTTTGGTACCGGGAATCGGCATTACGGCCGGGCCCGACGATGCCGGCTC CTCCTTGCCGCCGCCGGCGCCGCAGACTGGTGATGCTGACCGGAGGGCAGACTAGTTGAA GTGTTCTGGTTGTGTTCAGCTAGTATATGTAGCGAGTACTGCGTGCTTTCTTAATATGGT TATTACTAGGATTGTTCTTAGAAATGATTGTACGACGAGCATAAGAAAGTTTGTGCATGT ACAGTAGATTGAACTGCGCAGAAAAAAAACAAAACACAAAAACAAAAAAAAAAAACATGT
Homology of Contig U35_34526 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |