barSeed - Barley Seed Development Database

Probe CUST_14627_PI390587928

Source Contig U35_46500

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14627_PI390587928	Hv_44K_v2	GCACTTGCTCTTATCTAATTGCTTTGTTCCGTTTGTAGGATGCACTTGCTCTTATCTAAT	467	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.982	1.518	1.530	1.281	0.295	0.249
Raw	24.437	57.175	53.432	72.722	3.806	3.466

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20767.2	1480	3e-21	772 - 831	97	58 / 60	plus	ABC10035
JLOC1	JLOC1_14396.2	2328	2e-21	1514 - 1573	97	58 / 60	plus
Harvest21	ABC46710	622	6e-22	427 - 486	97	58 / 60	plus
Harvest35	U35_46500	622	6e-22	427 - 486	97	58 / 60	plus

Contig Sequence (622 bp)

>U35_46500 622 Hv_44K_v2
CGCCTGCTANTGGGGCAAATGGGGGGGCACCATGGCAAATGCCGCCACTTAAAGCAACAA
AGGTGCTGGCAAAATGCTTCTTAGCACTATTTTCACTCTGAAGTGGGTCAAATGGGATGT
CGCCATGGCAAACGCCCGAGGTGCCCAGGTGCTACTCAAGTGACCAAGCGCTGCAAATGG
CCTGCTGTGCCTAGCACCTTTTAATCCCTTCCAGTAGGCAGCTATGGTGGCTTGTTATCT
GATTCACAACGTGTAGGTTGCTATACAATAGCTTCTGTCTTCTCTTCAAATTATTCTCCT
TTTCTTTCATCATCTACCTTACAGAAGTTCGGGAATTATGTTCTGCTGTATCTACGATCT
AATTGCTTTGTTCTGTTTGTAGGGTGCACTTGCTCTTATCTAATTGCTTTGTTCCGTTTG
TAGGGTGCACTTGCTCTTATCTAATTGCTTTGTTTCGTTTGTAGGGTGCACTTGCTCTTA
TCTAATTGCTTTGTTCCGTTTGTAGGATGCACTTGCTCTTATCTAATTGCTTTGTTCCGT
TTGTAGGGTGCACTTGCTCTTACTGGCATGCCTGATGCACAATCAAAACCTGTGCTAGTA
TGTTCATTAAATGACAACACTG

Homology of Contig U35_46500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None