barSeed - Barley Seed Development Database

Probe CUST_14624_PI390587928

Source Contig U35_10573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14624_PI390587928	Hv_44K_v2	GATTGGAAGGCCCAACTGAAGCTTCCACCCGCAGATACACGATTCAGGACAGAGGATGTT	536	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.660	1.451	1.280	0.792	0.619	0.405
Raw	287.581	316.920	302.943	255.344	81.977	58.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359538	2203	2e-24	524 - 583	100	60 / 60	plus	ABC10644 ABC10645
MLOC	MLOC_68674.1	1648	2e-24	906 - 965	100	60 / 60	minus	ABC10644 ABC10645
JLOC1	JLOC1_45450.2	1621	8e-25	657 - 716	100	60 / 60	plus
JLOC1	JLOC1_45450.1	1559	8e-25	604 - 663	100	60 / 60	plus
Harvest21	ABC24143	596	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_10573	596	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_10573 596 Hv_44K_v2
CCCTCCTCCCCCCCGTGGCACGAACACTAGGCAGAAGGGGTTCAAATTTCGGCCTGATCC
AGGCGCCCACCCACCTTGATTCCACCATACGAATCCACTTCCCCATTCTGATCTCCTCGT
CCCTGTTCGATCTGCCCCTTCTCTCGCCGATTCCTGACAAGATCTGATCCCTCCTCACAC
ACATGGATCCACGCGCTAGGTACCCTCCCGGAACCGGCAACGGTCGCGGCGGGAACCCTA
ACTACTACGGTCGTGGCCCGCCGTTGTCGCAGAACAACCACCACCACCAGCAGCAGACGT
CGGCGGCGCACCAGCAACAATACGTGCAGCGCCAGCCGCAGCCGCAGCGGCAGCAGCATC
ACCAAGATCACCACCACCACCAGCAGCAGCATCACCAAAATCACCACCAGCAGCAGCAGC
AGCAACAACAGCAGCAGCAGTGGCTGCGGCGAAACCAGATCACCGCGGCCGGGACCAGCG
GGCCCAAGGTCGTGGCGCCACCCCCAGCGGCAGCCGGTAACGATTCTAGTTCACAAGATT
GGAAGGCCCAACTGAAGCTTCCACCCGCAGATACACGATTCAGGACAGAGGATGTT

Homology of Contig U35_10573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None