barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14610_PI390587928Hv_44K_v2CAAAGCAAAACCGTGGAAGTTGGAATGTCAGAACTGGGAGCGTCTGTTGGTTTCAAAAAA953GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5341.9281.1380.7510.3190.385
Raw 1129.7572127.9051144.3461171.465175.761231.701



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_2255210243e-25954 - 101310060 / 60plus



Contig Sequence (1024 bp)

>U35_22552 1024 Hv_44K_v2
GCATTGCAAGACATCAGATTCTCCACGCCATATTCCCCTGCCCTCATCTTATTATAGGTT
GTCTCGGAGTGAGAGAAAAGCGGATGAATGCTGCCAACTAGATTTAATTACTGATACTTT
TGTGAAGAGAATTCTAAAAGCTCACGAACCTTATAACCAACAGGAGGATACTACATGTTC
TACTATTACTGAGAGAGTATCTAAAGAATCTGCTCCTAAAAGGCAAACTCGTTCCTCATC
AAACAAACCATTATTTGGACAGTTTGTAAGTGGTCATGAGCAAGGGAAAACGAAGAAAAG
TTCAGTCCAGGCGAAGGATGTCCCCAGGAAAAATTACCTGGATATCTTGGATAAAGACAA
CGTGTCATCTTGTGGTTCCGCCGGCACAAAGTTGTCATCTCCAGGGTCTTTGGGTTTGAC
TAACGAAGCTGATTCTAGAGATCGTGCCTCACTCTTGGAAAATCAGAATCGTCTCACTGT
GAAGACGATACCTTCGAAGACTAGCCACACTGAGGACTTTCCTGACTGTCATCTCAGAGA
TTGCAGTGAACTAGACGAAGATTTTGGTGGTTGTGATGGTAATTTTGTGAAGCGTCCTTT
CTCCAGCAACAAAACAGCAGTGGATGCCCTCAAGAAGAAAAGCAAGAGAGCATTGGATTT
GAGAAATGCAAAGAATTCTGCTGGATCAGCCGCGGACACAACAGACAATGTTCGACAAAC
CAGATCAAGGAAGGCGCAAGCATAATAACCATCTAACTGAAGTTTTAGCTGACGTGTCTT
TGATATATATATATATATATGCTGAGTTCCGTACTACCTTTTGTACATCCTCTAGTGAGC
ACTGCAGCGATGGTAGAAAATCTTTGGTTTGCATGCCATCCGTGAAACCTTGTAAATAGA
GAAGTGGATGGCGGAGTGAGTGTTAACATTATCAGTCACGTAACTTATCTGATCAAAGCA
AAACCGTGGAAGTTGGAATGTCAGAACTGGGAGCGTCTGTTGGTTTCAAAAAAAAAAAAA
AAAA



Homology of Contig U35_22552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None