barSeed - Barley Seed Development Database

Probe CUST_14608_PI390587928

Source Contig U35_22554

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14608_PI390587928	Hv_44K_v2	TCTGTTAGATTTTCTGAGGAGAGAAAGAAGGGTATCAAGCGGGCTTTCATTATGATGAAA	999	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.874	7.086	1.645	0.585	0.236	0.184
Raw	644.733	978.735	186.647	111.298	14.749	12.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36970.2	2947	2e-24	2808 - 2867	100	60 / 60	plus	ABC17010
JLOC1	JLOC1_23875.2	1906	8e-25	1765 - 1824	100	60 / 60	plus
JLOC1	JLOC1_23875.1	2961	8e-25	2820 - 2879	100	60 / 60	plus
Harvest21	ABC17010	1073	3e-25	1000 - 1059	100	60 / 60	plus	ABC17010
Harvest35	U35_22554	1073	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_22554 1073 Hv_44K_v2
GGGATGTTACCTCACCGTCGATTGCAGCTGTGGTGGCCTCCATGGACCTTCCTGAAATCA
CAAATTACAAAGCTGTGGTTTCTGCCCAACCACCCAGGCAGGAGATTATTCAAGATCTCT
ATTGCCAAGGTACAGACCCTGAGAAGGGCACCCCTGTACACGGTGGAATGATGAGGGAGT
TATTAGTGTCATTCTATAAGAAGACTGGTTATAAACCCAGCAGGATCATATTCTACAGGG
ACGGTGTGAGCGAAGGGCAGTTCGCCCAAGTTCTGATGTATGAAATGGATGCCATCAGGA
AGGCTTGTGCATCTTTGCAGGCGGATTATCAGCCCAAAGTGACATTTGTTGTTGTCCAGA
AAAGGCATCACACAAGGCTCTTCCCTGAGGTGCACGGAAAAGAGACTGACAAAAGTGGAA
ACATCCTTCCTGGAACCGTGGTTGACACCAACATATGCCATCCCACCGAGTTTGATTTCT
ACCTGTGTAGCCATGCCGGTATTCAGGGCACAAGCAGACCAACTCACTACCATGTCCTCT
TCGATGAAAACGGTTTCACTGCCGATGGGCTGCAGCAGCTCACCAACAACCTGTGCTACA
CATACGCTCGATGCACTCGCTCTGTCTCTGTTGTTCCTCCTGCCTACTACGCTCACCTGG
CTGCGTTCCGCGCACGGTATTACGATGAGCCATCAGAGGGCTCGGACAGCGCCTCGATCG
TCAGCGGTGGCACCCGGGAGTCAGCCGCTACGGGCGCAGGAGCTGCCGGTCCTCCTGCGG
CATTCCGTCCCCTCCCCAGGATCAGGGATAACGTCAAGGAAGTGATGTTCTATTGCTGAA
TTGGCCCATAGCTGGCAAGTTCATGGGAGTCATGTGGTTGGCTTGTTGCTTAATTGGGTG
GTACATTTGCTGGGAATTTGTGATGTGGTTGGAACATGAATGTACTTTGGTTTATGTTGT
TGGTAAACATGGGAGATGTGATGCTGTCGTGGTTTTGCATCTGTTAGATTTTCTGAGGAG
AGAAAGAAGGGTATCAAGCGGGCTTTCATTATGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58600.1	1059	1e-125	protein\|PAZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g54977.1	1030	3e-152
Arabidopsis v10	AT1G48410.2	1050	9e-124	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050