- Probe CUST_14602_PI390587928
- Source Contig U35_34530
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14602_PI390587928 | Hv_44K_v2 | ATGGCGGCAGCAGCTGTATTACTCTAGTACTCGTATTGTAGTTGTTTTAGTGCCAAAAAA | 231 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.846 | 1.757 | 1.067 | 0.873 | 0.404 | 0.478 |
| Raw | 1042.016 | 1577.918 | 831.157 | 1068.523 | 172.340 | 224.971 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58327.1 | 744 | 9e-22 | 79 - 133 | 100 | 55 / 55 | minus | None |
| JLOC1 | JLOC1_37884.2 | 9877 | 5e-22 | 752 - 806 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_37884.1 | 9893 | 5e-22 | 752 - 806 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_34530 | 302 | 3e-25 | 232 - 291 | 100 | 60 / 60 | plus |
Contig Sequence (302 bp)
>U35_34530 302 Hv_44K_v2 GGAGAGGGCGCAAGAGGACGAGGAAGTGAGCGACCCGAACCAAGCAAAGCCAGCCGCCGG ATGTTTGACGGCCCCGATCACGCAGCTAGTTTCTTTTCGTTTCTTTTCCTCCAGTGTGCT AGTCATGTAGCAGCACCTTCGTCAAAATGATCTTCACGTGTTTCGTGCTTTGCTTAGAGG ACGGATAGGGACGAACTTAAATTTTGCGTGATGATGATGATGGATGGCCCGATGGCGGCA GCAGCTGTATTACTCTAGTACTCGTATTGTAGTTGTTTTAGTGCCAAAAAAAAAAAAAAA AA
Homology of Contig U35_34530 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |