barSeed - Barley Seed Development Database

Probe CUST_14590_PI390587928

Source Contig U35_10584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14590_PI390587928	Hv_44K_v2	CAGGCTGGCAGGCTTTCTGATTCCTATTCTTCTATAAAGATATTAGAAGATGAGTTGAGT	391	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.336	1.019	1.296	0.839	0.496	0.359
Raw	346.940	377.051	452.574	422.302	94.565	77.180

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8487.1	3829	2e-24	3221 - 3280	100	60 / 60	plus	ABC10199
JLOC1	JLOC1_5639.1	3672	8e-25	3115 - 3174	100	60 / 60	plus
Harvest21	ABC23406	461	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_10584	461	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (461 bp)

>U35_10584 461 Hv_44K_v2
GATATCAGATAAGCTAAAACGAGATCTGAAAGCAAGGAACACAGAAATGGAGAATCTGAA
ATATGAGATAGTGTCAAGGGAATCTGCAAATACTGATCTCAGAGAACAAGTCGAGAGTCT
ATCTTCTCAGGTTACACATTTTGATAAGCTGCAGTTGGACATTATTTCCCTTAGTGAGGA
AAAGGGTAAAGTAGATAACATGTTCGAAGAAGCTAAAGTTTCCTTGGACATTCTAGTTGA
TTCAGTATCAAGCATGGCTATTCCTGTCGATCACCCCTCTGAGGACCCTGTGAAAAAAGT
AAGCCAGATCGCCCAATTCATAATGGAATCACAAGCTGCTAAGAATCATCTGGAGAATGA
GCTACAGAGAGCACATGAGCAAGTTACTTTGCAGGCTGGCAGGCTTTCTGATTCCTATTC
TTCTATAAAGATATTAGAAGATGAGTTGAGTAAATTAAAGG

Homology of Contig U35_10584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g47860.1	1774	5e-66
Arabidopsis v10	None