barSeed - Barley Seed Development Database

Probe CUST_14587_PI390587928

Source Contig U35_10586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14587_PI390587928	Hv_44K_v2	AAGTTCAATAAAAGGTCGAGATGCTACTTTTTTGGGACCGGATGATAATCAATATGCTAT	555	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371801	5310	2e-24	1831 - 1890	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.3	778	2e-24	464 - 523	100	60 / 60	plus	None
MLOC	MLOC_43633.2	5269	2e-24	1708 - 1767	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.1	5108	2e-24	1619 - 1678	100	60 / 60	plus	ABC05985 ABC31802
JLOC1	JLOC1_28210.1	5179	8e-25	1618 - 1677	100	60 / 60	plus
Harvest21	ABC48461	618	3e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_10586	618	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_10586 618 Hv_44K_v2
TAGTGGATCCAAAGAAAACTTTCTGGCCCTGGGTTCATCCGGAATTTTAGCAGAGCACCA
ACTCCAGGCGCAGCTTCAAGAGCAGCACTTGAAGGGGCAGAGCAGGCTAACTATCTCAGA
TGTCGCAAGGAAGGCTTTCCTTCACAGTCATTTCATGGAGGGACATGCTAAAAGTGGTCC
AATCTCTCGTTTACCCCTTGTTACTATTTCAGATCCTAGCAACCTTTTGCGAGATATTCC
TGTTTGTCAGCCATTCCATCTGGAGTTGAACTTCTTCAACCAGGAGAACCGTGTGGTTCA
GTATCCAGTTAGAGCTTTCTACTTGGATGGATTTAACTTGATGGCCCATAACCTATCATC
TGGAGCCGAAAATCTCTATAAGAAGCTTTACTCTACGATTCCCTCAAATATGGAATGCCA
CCCCAAGTATATTTCATATAGCCCAAAGCAGCATATGTTTCTAGTTGTGTTTGAATTAAG
TGGTCCGAGTGGAGTGGCGCATGAAGTTGTTCTTTACTGGGAGCAGACTGATTTACAGAC
AGTAAACAGCAAAGGAAGTTCAATAAAAGGTCGAGATGCTACTTTTTTGGGACCGGATGA
TAATCAATATGCTATTCT

Homology of Contig U35_10586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24260.1	994	5e-115	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g51890.1	1625	8e-112
Arabidopsis v10	AT3G50590.1	1614	7e-78	Transducin/WD40 repeat-like superfamily protein \| chr3:18771292-18779220 FORWARD LENGTH=1614