barSeed - Barley Seed Development Database

Probe CUST_14586_PI390587928

Source Contig U35_10587

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14586_PI390587928	Hv_44K_v2	CTATTTTTCTCAGCAGTATGGGCAAGGTGATCGAGTATCAGATGCTTCCATGCCTGGATT	931	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.391	1.822	1.539	0.662	0.554	0.389
Raw	70.503	66.920	59.076	36.079	12.580	9.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4898.1	3125	3e-22	1064 - 1122	98	59 / 60	plus	ABC10694
JLOC1	JLOC1_3105.1	3185	1e-22	1060 - 1118	98	59 / 60	plus
Harvest21	ABC22496	990	1e-24	932 - 990	100	59 / 59	plus
Harvest35	U35_10587	991	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (991 bp)

>U35_10587 991 Hv_44K_v2
GGGGGGGCTCATCTGGATCCGTCGAACGGATCAGCTCCAAAGAAGTGGCAAAATTAGAAC
CATTAGCCCCCCCAGTTGCTGCGTCTCCCAATGGCATACGGGTGCCAATGCGGAGACCTG
ATGATGGTGGATCATTATGTCAAGCCAGGGTCCAGCTTTTGGTAAACCACTTCATAGTCA
AGTACCCAAAGTTGTCAACCTTTTTTCACTATGACATAGATATCAAGTTCGATCCAGCGT
CTTCAAAGGTTTCTGGCAAGGAGCTGTCCAATGCAGATTTTCTTTCTGCAAAGGCTGAGC
TTTTCAAGGATGACAGCTTTCGGCAGCTTTCATCAGCTGTTGCTTATGATGGAAAGAGAA
ACCTATTTACTGCTGCACAACTGCCAGAAGGTTTATTCCGTGTCAGAGTTCATTCAAAGA
CCTACATTGTGTCAGTAGAGTTTAAGAAGCAGCTTCCTTTAAGCCAAATCTCAGAGTTGC
CTGTGGCTAGGGAGATCTTACAGGGTCTTGATGTCATTGTGCGCGAGGCTTCTACCTGGC
GCAAGATTATACTTGGTCATGGATTTTACTCACCAGACAGCAAAGTGGATATGGGGTCAG
GTGTTGTGTCTATGAAAGGAACCCAGCAGACCCTTAAACATACTCAGCAGGGACTGGTCC
TATGTGTCGACTATTCAGTTATGCCATTAGGCAAAGATGGACCTGTTCTGGATATTGTGC
GGCAGTTTATAAAGCCCCTTCCCCTTGACTACAGGACAGCACTGAACAAGACTCATCGGG
AAAAGTTGGTGTATGAGCTCAAAGGCCAACGTATTACTGTGTCCCACCGGAAGACTAAGC
AGAAGTACACTATTCAAGGCTTCACTGATTTGCCAGCCAGCCAGATCACCTTTTTAGATT
CAGAATCAGGACAGACAAAGAGACTCGTTGACTATTTTTCTCAGCAGTATGGGCAAGGTG
ATCGAGTATCAGATGCTTCCATGCCTGGATT

Homology of Contig U35_10587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52540.1	1035	4e-146	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g21800.1	1028	9e-126
Arabidopsis v10	None