- Probe CUST_14585_PI390587928
- Source Contig U35_46516
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14585_PI390587928 | Hv_44K_v2 | GCACCAGCTTTGAGATTCTGGACATTTCATATAACAAAATCTCTGGAGAAATACCTTACA | 592 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.918 | 1.451 | 1.602 | 1.149 | 0.674 | 0.462 |
| Raw | 15.997 | 30.078 | 37.387 | 35.376 | 8.128 | 5.958 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63726.5 | 3317 | 2e-24 | 421 - 480 | 100 | 60 / 60 | plus | ABC21274 |
| MLOC | MLOC_63726.4 | 3550 | 2e-24 | 571 - 630 | 100 | 60 / 60 | plus | ABC21274 |
| MLOC | MLOC_63726.3 | 3442 | 2e-24 | 518 - 577 | 100 | 60 / 60 | plus | ABC21274 |
| MLOC | MLOC_63726.2 | 3580 | 2e-24 | 656 - 715 | 100 | 60 / 60 | plus | ABC21274 |
| MLOC | MLOC_63726.1 | 3550 | 2e-24 | 675 - 734 | 100 | 60 / 60 | plus | ABC21274 |
| JLOC1 | JLOC1_41776.2 | 3528 | 8e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41776.1 | 3685 | 8e-25 | 676 - 735 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46729 | 658 | 3e-25 | 593 - 652 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46516 | 658 | 3e-25 | 593 - 652 | 100 | 60 / 60 | plus |
Contig Sequence (658 bp)
>U35_46516 658 Hv_44K_v2 CTCAGCCCTAATGATTTGCTTCCTTTGCTTGCGCAGGGATCTCAAGGGGAACAAGCTCAC AGGCCAAATCCCAGATGAGATTGGGGATTGTGTCTCCTTAAAATACTTGTACGCCACCCA ATCCGGGTCTTCTTTTATTCTTCTATATACTACTCCTACCTTTTTGCTGTAGACATGGAT GATTCTTGTTTATAGTATTTTTATACCGGTTGACATGTGCCTCTTCTTGTGTGTGTGTGT CCTACATACAGGGATTTGTCCTTCAACCTGCTGTATGGAGACATCCCCTTCTCCATCTCC AAGCTCAAGCAACTCGAGGATTTGATTCTGAAGAACAACCAGCTCACGGGACCCATCCCT TCCACACTGTCCCAGATTCCAAATCTCAAAATCTTAGATCTTGCCCAGAACCAGCTCACA GGGGACATCCCAAGGCTCATCTACTGGAATGAAGTTCTACAATACCTAGGTTTGAGGGGT AATTCACTCACCGGAACCTTGTCACCTGACATGTGCCAACTCACTGGCCTGTGGTACTTT GATGTGAGGGGAAACAATCTCACAGGAACAATTCCAGAGAGCATANGGAACTGCACCAGC TTTGAGATTCTGGACATTTCATATAACAAAATCTCTGGAGAAATACCTTACAACATAG
Homology of Contig U35_46516 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g03970.1 | 1000 | 4e-83 | protein|receptor-like protein kinase 5 precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g49950.1 | 983 | 6e-85 | |
| Arabidopsis v10 | AT5G07180.1 | 967 | 1e-76 | | Symbols: ERL2 | ERECTA-like 2 | chr5:2227787-2233232 REVERSE LENGTH=967 |