barSeed - Barley Seed Development Database

Probe CUST_14574_PI390587928

Source Contig U35_8765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14574_PI390587928	Hv_44K_v2	TTGTATCAAAGAAATGGAAGAGGTGGAGAATTCCAGCAAGCGTAAAGCACCTGAGCTGAG	206	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248677.1	3548	2e-24	211 - 270	100	60 / 60	plus	ABC11876 ABC15312
MLOC	MLOC_10989.7	2977	2e-24	2675 - 2734	100	60 / 60	minus	None
MLOC	MLOC_10989.6	3034	2e-24	2716 - 2775	100	60 / 60	minus	None
MLOC	MLOC_10989.1	3375	2e-24	3080 - 3139	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.2	3375	2e-24	3080 - 3139	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.3	3379	2e-24	3080 - 3139	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.4	3472	2e-24	3133 - 3192	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.5	3476	2e-24	3133 - 3192	100	60 / 60	minus	ABC11876
JLOC1	JLOC1_7238.2	3231	8e-25	281 - 340	100	60 / 60	plus
JLOC1	JLOC1_7238.1	3193	8e-25	243 - 302	100	60 / 60	plus
Harvest35	U35_8765	475	3e-25	207 - 266	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_8765 475 Hv_44K_v2
TCTAAAACCTCCTCCTCCGCTGTACCCTAGAGCTGCCGCCTCGCCGTAGCTTAGCGTCAC
CGCCGACGCCTCAACCCCCAACCCTCAACCGGCCAACCCCTCCGTCTCTCGCTCGCGGGC
GCCGCCGCCATCGCCGTTCCCTCCCAAGCTCGTCGCCTCCCTGCTGTCCGAACCCCTTCC
CCAACCTTGGCCGTTGGTCTCTGAGGTTGTATCAAAGAAATGGAAGAGGTGGAGAATTCC
AGCAAGCGTAAAGCACCTGAGCTGAGCTCGGAGGACAATTCCTCTGCTGTTGTTCTGCAC
GAGCAGGAGCCGCTGCCTGGCTCGACTGCCAAGCGTCAGAATCTCGCCCGGTCGTGCATC
CATGAGGTCGCTGTCCCCAACGGCTACGATTTGTCCAAGGATGAGGCCGTACATGGGACC
CTTTCAACCCTGCGTTTAATGGGGAGATGGCCAAACATACCCGTTCAGCTTGACC

Homology of Contig U35_8765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None