barSeed - Barley Seed Development Database

Probe CUST_14573_PI390587928

Source Contig U35_8766

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14573_PI390587928	Hv_44K_v2	AATTAGGTTTGAGCAACCTGATCACAGAGAATCAATGTCTGAGTTCCTGGAACTCGAGGC	222	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57586.1	3135	2e-24	217 - 276	100	60 / 60	plus	ABC08476
MLOC	MLOC_57586.5	2712	2e-24	2347 - 2406	100	60 / 60	minus	ABC08476
MLOC	MLOC_57586.7	2485	2e-24	2100 - 2159	100	60 / 60	minus	ABC08476
MLOC	MLOC_57586.6	2463	2e-24	2104 - 2163	100	60 / 60	minus	ABC08476
MLOC	MLOC_57586.2	3083	2e-24	2724 - 2783	100	60 / 60	minus	ABC08476
MLOC	MLOC_57586.3	3104	2e-24	2724 - 2783	100	60 / 60	minus	ABC08476
JLOC1	JLOC1_37346.3	3085	8e-25	301 - 360	100	60 / 60	plus
JLOC1	JLOC1_37346.2	3080	8e-25	296 - 355	100	60 / 60	plus
Harvest35	U35_8766	478	3e-25	223 - 282	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_8766 478 Hv_44K_v2
AGCCCACAGGAGGCCAGAACCCCCGCGGCTTTCCCCGCTCCCTACTCCAGCGCACCTGCC
CGGAAACACCTCTCCTCGCCGGCGCCGGCGCCGGAGAAGAGGAGCACAGGGCAGGCCTCC
CCGCATCCGCCGAAGCCGCGCCACCTCCAAGGCGAAGATCAACAGCTCCGTGCTTCTGGT
GGAGGCCTGATACTGTCGCGAGGACCGAGGGTCTATCCAAGAAATTAGGTTTGAGCAACC
TGATCACAGAGAATCAATGTCTGAGTTCCTGGAACTCGAGGCCCGGGATGGGGTAAGGAT
GACCTGGAATGTGATACCGGGCACCAAGCAGGATGCTGCTAGCTGCGTCGTCCCTGTTTC
GACCATGTACACTCCTCTGAACCCCAACCCTGCCATTCCTGTTCTTCCTTACGCCCCACT
CCGCTGCCGCATCTGCCGCGCCATCCTCAACCCCTTCTCGGTCGCCGACTTCAATTCG

Homology of Contig U35_8766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None