barSeed - Barley Seed Development Database

Probe CUST_14567_PI390587928

Source Contig U35_8775

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14567_PI390587928	Hv_44K_v2	CGGTTGCTGTACATACGGCAGGCATGTGTCAAAATTACGAAGTGTTGCTGACTCAAAAAA	612	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.495	1.737	3.347	2.668	0.837	0.836
Raw	144.949	834.549	1340.659	1697.244	184.268	197.436

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_8775	683	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_8775 683 Hv_44K_v2
ACGGGTCGGGGACGGTGCACGGCGAGCGGCGGATCGCGTACCACCTGGACCCGGTGGACA
GGGAGAACCAGCGCGAGGGCCTGCGGCGGGCGCTGCGCATCCTGGTGGCGGCCGGCGCGA
CGGAGGTCGGCACACACCGGAGCGACGGGCAGAAGCTGAGGTGCAAGGGCGCCACGGACG
AGGAGGTTGAGGAGTTCCTGGACGGCGTCGCCGGGGTGCGCGGGCCGCAGTCCAAGAGCG
AGAACTGGAGCCTGTGCTGCACGGCGCACCAGATGGGTAGCTGCAGGATGGCCGCGACGG
CCGGGGACGGCGCCGTGGACACGCGCGGCGAGAGCTGGGAGGTGGAGCGGCTGTACGTGT
GCGACGGCAGCGTCCTGCCCGGCGCGGTGGGCGTCAACCCCATGATCACCATACAGTCCG
TGGCCTACTGCCTCGCCACCGGCATCGCGGAGCAGCTGAGACGTGATCAGTCCTCCGGAA
AAAACTAGTGCTCCACACATGAATCATCGCGGCATGTACGCGGAATAATAAGTTGGAATA
AGTTTGGGGCTTGTTTGTGATACAAGAACGACGCGGATCAGTATGGACTATGGTTATCCC
CATTTGATTCCTCGGTTGCTGTACATACGGCAGGCATGTGTCAAAATTACGAAGTGTTGC
TGACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40840.1	771	1e-78	protein\|alcohol oxidase, putative, expressed
Brachypodium v1_2	Bradi3g49085.1	767	2e-94
Arabidopsis v10	AT4G28570.1	748	3e-54	Long-chain fatty alcohol dehydrogenase family protein \| chr4:14119548-14121923 FORWARD LENGTH=748