barSeed - Barley Seed Development Database

Probe CUST_14559_PI390587928

Source Contig U35_8783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14559_PI390587928	Hv_44K_v2	AGCATGGTTACTATTATTTCTAGTGACATGCGGTGCTGGGATGCTCCTGAAAAGCTGATA	1154	GeneList: darkorange2 MasterList: Arginine_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.098	1.107	1.298	0.978	0.346	0.269
Raw	364.155	543.259	586.271	697.585	86.693	73.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76355.2	2159	7e-23	1323 - 1383	98	60 / 61	plus	None
MLOC	MLOC_76355.1	2339	7e-23	1241 - 1301	98	60 / 61	plus	None
JLOC1	JLOC1_50921.1	2483	4e-23	1234 - 1294	98	60 / 61	plus
Harvest21	ABC17169	677	3e-25	618 - 677	100	60 / 60	plus
Harvest35	U35_8783	1214	3e-25	1155 - 1214	100	60 / 60	plus

Contig Sequence (1214 bp)

>U35_8783 1214 Hv_44K_v2
GCTTCCTCCTCGCCCCGCTCGTCGATCCCGACTACCGGCCCACGCCCGGCGCCGTCCTGC
CGGTGGCGGCCTCGGACCTCGTCCTCAGCCCGTCCCAGTGGAGCAGCCACATCGTCGGGA
AGGTCAGCGAGTGGATTGATCTGGATTCCGAGGACGAGCAGCTGCGGCTCAATTCGGAGC
TCACGCTCAAGCAGGAGATCGCCTGGGCGACTCATCTCTCCTTGCAGGCGTGCGTTCTTC
CTCCTCCCAAGAGATCGACCTGTGCCAATTATGCTAGAGTTGTAAATAATATTTTGCAAG
GCTTGACCAATATGCAGCTGTGGCTTAAGATACCTCTGGAGAAGTCTGAATCTATGGATG
AAGACCATGACAAAGTAAATAATAATAACCCCACGAGTGAAACAGTAGATTCTTGGGAAT
CGTGGAATTCATTCAGACTGTTATGCGAGCATAGCAGTCAACTGTATGTAGCACTTGATA
TCTTGAGCTCGCTGCCATCAATGAACTCTCTAGGACGGTGGTTTGGGGAGCCTGTAAGAG
CTGCGATTGTTCAGACAGATGCTTATCTAACAAATGCAAGAGGTTATCCTTGCTTGCCCA
AACGCCACCAGACTCTGCTTACTGGATTTTTTAACCATTCAGTTCAGGTAATTATCTCTG
GGAGATCAAATCATAATCTTTCCCAAGTATCTGAAGGAGTGCTCTCAGGTGATGAAAACC
ACACCGAAGATACCCCCACTCGGCATGCATTGGGCCCGTATCTTGACTACATTGCCTACC
TCTATCAGAGGATGGATCCACTTCCTGAGCAAGAACGGTTCGAGATCAACTATAGGGATT
TCTTGCAATCTCCTCTCCAGCCTCTCATGGATAATTTGGAAGCACAGACTTATGAGACTT
TTGAGAAAGACACTGTGAAGTATACACAGTATCAAAGAGCAATCGCTAAGGCTTTGGTTG
ATAAGGTTTCAGATGATGAAGTCTCCACAGCTAGGATGGTCTTGATGGTTGTTGGAGCAG
GCCGAGGGCCTCTAGTAAGAGCATCATTGCAGGCCGCAGAAGAAACTGGTCGAAAGCTAA
AAGTGTATGCAGTGGAGAAAAATCCTAACGCAGTCATTACTCTTCATAGTTTGATCAAAT
TGGAAGGGTGGGAAAGCATGGTTACTATTATTTCTAGTGACATGCGGTGCTGGGATGCTC
CTGAAAAGCTGATA

Homology of Contig U35_8783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g04660.1	650	protein\|arginine N-methyltransferase 5, putative, expressed
Brachypodium v1_2	Bradi3g03526.2	651
Arabidopsis v10	AT4G31120.1	642	\| Symbols: SKB1, ATPRMT5 \| SHK1 binding protein 1 \| chr4:15132185-15136568 REVERSE LENGTH=642