barSeed - Barley Seed Development Database

Probe CUST_14558_PI390587928

Source Contig U35_8784

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14558_PI390587928	Hv_44K_v2	AATACGAGGATGAAGATCGTACTTGGAACAGCACATGGTATTGCACACATCCATGCGGAA	1431	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.954	2.053	2.801	1.023	0.204	0.195
Raw	90.810	143.116	168.238	97.300	6.073	7.075

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66623.1	2520	2e-24	677 - 736	100	60 / 60	minus	ABC25245
JLOC1	JLOC1_43925.1	2591	8e-25	1634 - 1693	100	60 / 60	plus
Harvest21	ABC17110	1630	3e-25	1432 - 1491	100	60 / 60	plus
Harvest35	U35_8784	1630	3e-25	1432 - 1491	100	60 / 60	plus

Contig Sequence (1630 bp)

>U35_8784 1630 Hv_44K_v2
CCCAGCGCCGTCGACCCCTTCCGCCGCCCGGGCTCCAGCTGTTTGATTACTACATTGGCG
TAAACAGATGAAGTTGTCGCCCATTTAGTCACGTTGACTCCAAGATATTCTCTAATGGGT
TACCTAAATCTTAGAGGCTCTTTGCTTCCATTGCTCTGTCTGCATCTGCTCCTATCACTA
TTCATCTCATTGGCTACAGCAGACATAGCCTCTGAGAAGAAAGCTCTCCTTGCTTTTTCC
TCGGCAGTCTACCATGGCAAGAAGCTCAACTGGGGTCAAAACATCTCACTGTGCTCATGG
CATGGTGTAACATGCGCAGAGGATCGATCACATGTATTTGCCCTTAGGGTACCAGCTGCT
GGGCTGATTGGTGCAATTCCTCCAAATACTCTTGGCAAGCTTCTCTCCCTTCAAGTGTTA
AGCCTGAGGTCTAATCGGTTGAGCGGAAGCATTCCTTCTGATGTCACCTCACTCCCTTCT
TTGCGTTCCATATTTCTTCAGCATAATGAACTGTCAGGAGATTTGCCTTCCTTTTTTTCT
CCAGGCCTCATTACCCTTGACCTTTCCTATAACTCCTTTACAGGGCAAATGCATACAAGC
TTGCAAAATCTTACTCAGTTATCTATCCTGAATTTGGCAGAAAATTCTTTGTCTGGACCT
ATTCCTGATCTCAAACTTCCAAGCTTAAGACAATTAAACTTGAGCAATAATGAGCTGAAT
GGCTCAATTCCTCCCTTCCTCCAAGTATTCTCAAATAGCTCATTCATGGGGAACCCTGGA
TTGTGTGGGCCTCCTCTAGCTGAATGTTCTATTCTTCCTTCGCCGACACCCTCGTTACCA
CCGTCACAAATATTGCCACGACGTGGAAAGAAAGTGGCTACTGGATTTATCATTGCGGCT
GCTGTTGGAGGCTTTGCTGTATTTCTGCTAGCTGCTGTGGTTTTCACCGTGTGCTTTTCA
AAGAGGAAGGATAGGAAAGAAGCGGGACCGGATTACAAGAGCAAGGGCACCGATGGTGCA
AGGATTGACAAACATAAAGGGGATGTCAGCAGTGGTGTCCAAATGGCTGCCAAGAACAAG
TTAGTTTTCTTGGAGGGATGCAGTTACAACTTTGACTTGGAAGACTTGCTGAGAGCTTCT
GCCGAAGTCCTTGGCAAGGGGAGCTATGGAACTGCCTACAAAGCTTTACTCGAGGATGGC
ACTATAGTGGTTGTCAAGAGGCTCAAGGATGTTTTTTCAGGGAAGAAAGAATTTGAGCAG
CAGATGGAGCTGAGGGGGAGGGTAGGCAAACATGCAAACCTCGTGCCCCTACGTGCTTAC
TACTTCTCAAAGGATGAAAAGCTTGTGGTTTATGAATTTGTTACTACTGGCAGCTTTTCA
GCCCTGCTACACGGCATTAAGGGTATTGTGGAGAAGACCCCATTGGACTGGAATACGAGG
ATGAAGATCGTACTTGGAACAGCACATGGTATTGCACACATCCATGCGGAAGGGGGACCC
AAGCTTGCTCATGGCAACATCAAGTCCACCAATGTGCTCCTCGATCAAGACCACAACCCT
CACGTCTCAGACTACGGGATGAGCACTCTGATGAGTCTCCCTATCAACACCTCCCGTGTG
GTGGTCGGCT

Homology of Contig U35_8784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21510.1	635	0.0	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	Bradi1g63350.1	641	0.0
Arabidopsis v10	AT5G58300.1	654	6e-144	Leucine-rich repeat protein kinase family protein \| chr5:23572821-23574871 FORWARD LENGTH=654