barSeed - Barley Seed Development Database

Probe CUST_14557_PI390587928

Source Contig U35_8786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14557_PI390587928	Hv_44K_v2	GTGATGCAAATTTTCTCTGGAATCTTCCATATTGAATGGTTTGTCTTCCTGATGTAATTC	602	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.220	1.673	1.549	0.894	0.260	0.365
Raw	850.442	1788.354	1452.693	1323.497	133.936	204.992

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68992.2	2409	2e-24	62 - 121	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.1	2384	2e-24	70 - 129	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.3	2315	2e-24	47 - 106	100	60 / 60	minus	ABC24103
JLOC1	JLOC1_45698.1	2351	8e-25	2218 - 2277	100	60 / 60	plus
Harvest21	ABC24103	683	5e-23	17 - 75	98	59 / 60	minus	ABC24103
Harvest35	U35_8786	713	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_8786 713 Hv_44K_v2
TTCAAACATGATGACTCCCTGTAATGTCAATTGCCCTCCTTCATTGGAGCTGAAAACTCC
AATAGGAGCACATCATATAGTTCAGAAGAACCCAGATGGTACACCTCTTGATAAGTTTAA
TGCACTGGGATCTAACCTAAAGGAATCTCTTATTCAACAGTATCTTGAGTTCTTAAATGT
TGCGAACAAGGAAGAGCTACAGCAACTGAAAGGAATTGGTGAAAAGAGAGCAGACTACAT
TCTCGAGCTCCGGGAGGATTCACCCAGACCATTCCGATCTCTTTCGGACTTGGGAAACAT
AGGTCTATCAACGAAACAAATCCAGGATATCCTACGCAAAACAGCCACCGGAATCTTCAA
ATGATCACTAGAATGGACTGCTACCTGTAATCTACCACCTTGGAGATGCTGGGTCATATT
GGTTCACCATCCGTGTCACCAACGTATGGTGTTGTACTTGTGCTGTTAACTGTCAGCATG
TTGTTGACATAATTGCAGTTTTACTCTCAATTCAACAGCAGGCCTGTTGCTGTTGCTGTT
GCTACTAAACCTAGAGCAATGGGTCTTGTTGCAATTTTTCTCTTGTAACTTATCTTGCTG
AGGTGATGCAAATTTTCTCTGGAATCTTCCATATTGAATGGTTTGTCTTCCTGATGTAAT
TCAAATTTTATATGGAATCTTGTGTATTGAATGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g23290.1	587	3e-55
Arabidopsis v10	None