barSeed - Barley Seed Development Database

Probe CUST_14556_PI390587928

Source Contig U35_8787

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14556_PI390587928	Hv_44K_v2	TAGCATGTGTTATAAAATACTTGGCAGTGTGTATATCGTGCATGTTTTAAACTTGTGTGG	682	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.041	0.158	0.571	2.084	3.029	1.837
Raw	4.808	34.196	107.976	564.733	298.761	206.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57427.1	1475	2e-24	1377 - 1436	100	60 / 60	plus	ABC08993 ABC11340 ABC17688
JLOC1	JLOC1_37220.1	1444	8e-25	1383 - 1442	100	60 / 60	plus
Harvest21	ABC17688	797	3e-25	56 - 115	100	60 / 60	minus	ABC17688
Harvest35	U35_8787	797	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_8787 797 Hv_44K_v2
AGCATCAGGGCTTCCCTGAATCTACTACATTGGCTCCTCTCATGGACTATGATGTATTTT
CATCACTGGCGCCACCACCGCCGCTGTCTGCAGCTTCTGTATATCAGATGCATGCCATCG
AGGCCGGATCATCCATGATGGGTAGTGTGGTGTTCCCAATGATGAACAACGATTACTTTG
GGAACAACCACCACCAGATGATGGCCACCCCACCACAGTCAACGATGTCATTCAACAACC
ACAACCAGCACCAACAGATGATGCATATGAGTGCAAACCGGGGCTTCATGGCAGGGGTCG
ATCCAGGGAGCAGTTCATCATGCATAGCGTCGCAGGAGGATGTTATGACTGGCCTGAGCA
ACAACAACCATGGCTATGTTGGCGCATCGATGTCCGACGAGATCTCGTCAGTCAACATGG
GTATGGATGGCATGTGGAACTACTAATGATCAGATGATGTGAGAGGACATATACATATGT
TCATGCATAAAATAATTACCCACCAGAAGATCAGTTGATATATACCAACATCTTTATTAG
TTTGCACCGCATTTTTATTTTCAGCATGGTCAGAAAAGAGTTTGTATGTATTGTCTTGTT
GGCTTGCCTCTCTTGTTCTAGTATTGTGTGTATGTGTGTTGGCTTGTATATGCACCACTT
ACTGGTGTATACCTAGCTAAATTAGCATGTGTTATAAAATACTTGGCAGTGTGTATATCG
TGCATGTTTTAAACTTGTGTGGGATAAATCTTTTGTTTAATAATTAATGAATATTTGACT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_8787 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None