- Probe CUST_14555_PI390587928
- Source Contig U35_8788
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14555_PI390587928 | Hv_44K_v2 | TTTACTTGGTCTATGATATAAATCGAGTTATTCAAATTAGAGCCGGAGCTATCGAGGCTA | 701 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355657 | 2294 | 2e-24 | 1095 - 1154 | 100 | 60 / 60 | plus | ABC13549 |
| MLOC | MLOC_4342.9 | 4259 | 2e-24 | 4153 - 4212 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.3 | 4758 | 2e-24 | 4526 - 4585 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.6 | 4633 | 2e-24 | 4401 - 4460 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.1 | 6502 | 2e-24 | 6357 - 6416 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.10 | 1408 | 2e-24 | 1176 - 1235 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4342.7 | 5175 | 2e-24 | 4963 - 5022 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.4 | 4696 | 2e-24 | 4464 - 4523 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.5 | 4584 | 2e-24 | 4352 - 4411 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| MLOC | MLOC_4342.2 | 6665 | 2e-24 | 6433 - 6492 | 100 | 60 / 60 | plus | ABC14699 ABC43345 |
| JLOC1 | JLOC1_2686.4 | 4430 | 8e-25 | 4198 - 4257 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2686.3 | 4438 | 8e-25 | 4206 - 4265 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2686.2 | 4499 | 8e-25 | 4267 - 4326 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2686.1 | 4770 | 8e-25 | 4538 - 4597 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17503 | 761 | 3e-25 | 702 - 761 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8788 | 761 | 3e-25 | 702 - 761 | 100 | 60 / 60 | plus |
Contig Sequence (761 bp)
>U35_8788 761 Hv_44K_v2 TTCTCATGTCGATTATAGGTTAAAGATTCAAGGATTGCAAAACCTTTATGAGTATCTCCG TGATGCGGAAAGCCAACTCACGGCTGACAGTACTGGCAAGCCTACTGTACCCTATGCAAC TAATGGTGGGAGTGAAGTGCCTGTTGCTGCTGGAGCGGGGGACACCAATATATGTGGTGG TATTATCCAGTTGTATTGGAATTCTATTCTTGAAAGGTCCTTGGATATGAACGATCAAGT TCGCCATGCTGCACTAAAGATTGTTGAAATTGTTCTTCGCCAGGGTTTAGTTCACCCAAT TACTTGTGTTCCACACCTTATAGCACTTGAAACTGACCCTGTGGAGGGGAACTCAAAGTT GGCTCATCATTTGCTGATGAATATGAATGAAAAGTATCCTTCATTTTTTGAAAGCCGCTT AGGTGATGGCCTACAAATGTCGTTTAGATTCTTCGAGACCATAGTCAGCAACCATAACGT GGTGGCAACCAACATGAAATCAAATCCGATTGCATTTGTTAAACCTGGCATATCTAGAAT ATATCGTCTTATCCGTGCAAATCGAAATTCAAGAAACAAATTTGTACACTCAATAGTTCG CAAATTTATATCTGACAGCCGAAGTTACCCCACAATTGGTTTTCTTGTATACTGTGTTGA AGTTCTTGCATCTCTCCCTTTCACATCTCCTGATGAACCACTTTACTTGGTCTATGATAT AAATCGAGTTATTCAAATTAGAGCCGGAGCTATCGAGGCTA
Homology of Contig U35_8788 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g01940.1 | 985 | 2e-154 | protein|sister chromatid cohesion 2, putative, expressed |
| Brachypodium v1_2 | Bradi1g59331.1 | 992 | 1e-159 | |
| Arabidopsis v10 | AT5G15540.1 | 1846 | 3e-97 | | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846 |