barSeed - Barley Seed Development Database

Probe CUST_14550_PI390587928

Source Contig U35_8794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14550_PI390587928	Hv_44K_v2	GAACACTTTCCATATGCCGACTAGATTATTGCATTGGAGAAGGACATCATTGATAAAAAA	644	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.813	5.572	1.461	0.746	0.361	0.339
Raw	128.017	178.367	37.662	30.615	2.933	3.940

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21100.2	436	2e-24	270 - 329	100	60 / 60	plus	None
JLOC1	JLOC1_14639.1	715	8e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_37451	610	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_8794	742	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_8794 742 Hv_44K_v2
CAGGCATCGGCGTGCTCTACGAGTCCGGCCGCCGCCACTTCTACCAGAACCCCAGGCTGA
GCAAGGACGGCCAGGTCATCCCCACCAAGGAGATGCACTTCTTCAAGACCATCGCCAGCT
TCCATCTCTACATGCTCATCAAGTACAAGCTGCCACTTGAGATCCTGCACGTGGTGAACC
TGCTCCTCTGCGGCCTCTTCTCGCACCTCTACGACGACCTCACCCGGAAATACAAGTTCG
TCATGCATCTCGTCGACGTCTACGGGCCCTTCGCCTTATTCAAAGGATGGTAAGCAAGCG
TCACCACTAGTACTCATCCAACCTTCACTAATAGCATCTCCTTCACGTCTCATCTTCTTT
ACTTGTTGTCAAATCATTTGAATGAATCAATATATCAATCAAGCTTCGACGACATCAACT
TGGAGCGGCTCCGACTGACCGTGACCAAGACAAGCCCGGAGGACGACATGTTCAATTTCG
ATCCCAAGACCGTCGACTGGAACGACTACTTCTACAAGATCCACATACCGGGTGTCCTCA
AGTATGTGCTCAAGTAAAACTGCAGCAATTTGTATCCACATATATGCACCTTATCTTCTC
CAAAAAGCCATTCTTGTATGATGGGGATGTGATAGAAAAACAAGGAACACTTTCCATATG
CCGACTAGATTATTGCATTGGAGAAGGACATCATTGATAAAAAAAGAAGCATGTATTCTT
GAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44360.1	510	3e-66	protein\|male sterility protein 2, putative, expressed
Brachypodium v1_2	Bradi3g42780.1	511	2e-80
Arabidopsis v10	None